Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2474

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2473 and Shewana3_2474 are separated by 287 nucleotidesShewana3_2474 and Shewana3_2475 are separated by 230 nucleotides Shewana3_2473: Shewana3_2473 - succinate dehydrogenase (ubiquinone) (RefSeq), at 2,959,864 to 2,960,595 _2473 Shewana3_2474: Shewana3_2474 - hypothetical protein (RefSeq), at 2,960,883 to 2,961,149 _2474 Shewana3_2475: Shewana3_2475 - AMP-binding domain protein (RefSeq), at 2,961,380 to 2,963,104 _2475 Position (kb) 2960 2961 2962Strain fitness (log2 ratio) -1 0 1 2at 2960.210 kb on + strand, within Shewana3_2473at 2960.250 kb on - strand, within Shewana3_2473at 2960.611 kb on + strandat 2961.009 kb on + strand, within Shewana3_2474at 2961.053 kb on + strand, within Shewana3_2474at 2961.504 kb on - strandat 2961.598 kb on + strand, within Shewana3_2475at 2961.620 kb on - strand, within Shewana3_2475at 2961.630 kb on - strand, within Shewana3_2475at 2961.923 kb on + strand, within Shewana3_2475at 2962.027 kb on - strand, within Shewana3_2475at 2962.059 kb on - strand, within Shewana3_2475at 2962.120 kb on - strand, within Shewana3_2475

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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2,960,210 + Shewana3_2473 0.47 -0.0
2,960,250 - Shewana3_2473 0.53 +2.0
2,960,611 + +1.4
2,961,009 + Shewana3_2474 0.47 -0.8
2,961,053 + Shewana3_2474 0.64 -0.9
2,961,504 - -1.3
2,961,598 + Shewana3_2475 0.13 +0.1
2,961,620 - Shewana3_2475 0.14 -0.9
2,961,630 - Shewana3_2475 0.14 -0.5
2,961,923 + Shewana3_2475 0.31 +0.1
2,962,027 - Shewana3_2475 0.38 +1.3
2,962,059 - Shewana3_2475 0.39 +2.0
2,962,120 - Shewana3_2475 0.43 -0.2

Or see this region's nucleotide sequence