Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rbgA and Shewana3_2396 are separated by 299 nucleotides Shewana3_2396 and Shewana3_2397 are separated by 286 nucleotides Shewana3_2397 and Shewana3_2398 are separated by 84 nucleotides
Shewana3_2395: rbgA - ribosomal biogenesis GTPase (RefSeq), at 2,874,207 to 2,875,148
rbgA
Shewana3_2396: Shewana3_2396 - hypothetical protein (RefSeq), at 2,875,448 to 2,875,888
_2396
Shewana3_2397: Shewana3_2397 - hypothetical protein (RefSeq), at 2,876,175 to 2,876,732
_2397
Shewana3_2398: Shewana3_2398 - hypothetical protein (RefSeq), at 2,876,817 to 2,877,422
_2398
Position (kb)
2875
2876 Strain fitness (log2 ratio)
-2
-1
0
1 at 2875.417 kb on - strand at 2875.495 kb on - strand, within Shewana3_2396 at 2875.544 kb on - strand, within Shewana3_2396 at 2875.634 kb on + strand, within Shewana3_2396 at 2875.677 kb on - strand, within Shewana3_2396 at 2875.940 kb on - strand at 2876.081 kb on + strand at 2876.286 kb on + strand, within Shewana3_2397 at 2876.546 kb on + strand, within Shewana3_2397 at 2876.705 kb on + strand at 2876.778 kb on - strand at 2876.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 2,875,417 - +0.8 2,875,495 - Shewana3_2396 0.11 -1.0 2,875,544 - Shewana3_2396 0.22 -1.6 2,875,634 + Shewana3_2396 0.42 +1.0 2,875,677 - Shewana3_2396 0.52 -0.4 2,875,940 - +0.5 2,876,081 + -1.0 2,876,286 + Shewana3_2397 0.20 +1.0 2,876,546 + Shewana3_2397 0.66 -2.6 2,876,705 + +1.0 2,876,778 - +0.2 2,876,808 - +0.4
Or see this region's nucleotide sequence