Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2149 and Shewana3_2150 are separated by 12 nucleotides Shewana3_2150 and Shewana3_2151 are separated by 9 nucleotides Shewana3_2151 and Shewana3_2152 are separated by 312 nucleotides
Shewana3_2149: Shewana3_2149 - phosphogluconate dehydratase (RefSeq), at 2,573,951 to 2,575,777
_2149
Shewana3_2150: Shewana3_2150 - 6-phosphogluconolactonase (RefSeq), at 2,575,790 to 2,576,488
_2150
Shewana3_2151: Shewana3_2151 - glucose-6-phosphate 1-dehydrogenase (RefSeq), at 2,576,498 to 2,577,970
_2151
Shewana3_2152: Shewana3_2152 - DNA-binding transcriptional regulator HexR (RefSeq), at 2,578,283 to 2,579,137
_2152
Position (kb)
2576
2577
2578 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2575.805 kb on - strand at 2576.006 kb on - strand, within Shewana3_2150 at 2576.242 kb on - strand, within Shewana3_2150 at 2576.373 kb on - strand, within Shewana3_2150 at 2578.001 kb on - strand at 2578.225 kb on + strand at 2578.341 kb on + strand at 2578.382 kb on - strand, within Shewana3_2152 at 2578.566 kb on - strand at 2578.617 kb on + strand, within Shewana3_2152 at 2578.625 kb on - strand, within Shewana3_2152 at 2578.945 kb on + strand, within Shewana3_2152
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 2,575,805 - +1.3 2,576,006 - Shewana3_2150 0.31 -1.6 2,576,242 - Shewana3_2150 0.65 -1.3 2,576,373 - Shewana3_2150 0.83 -0.3 2,578,001 - -0.4 2,578,225 + -1.0 2,578,341 + -3.0 2,578,382 - Shewana3_2152 0.12 +2.4 2,578,566 - -0.7 2,578,617 + Shewana3_2152 0.39 +1.6 2,578,625 - Shewana3_2152 0.40 +0.4 2,578,945 + Shewana3_2152 0.77 -2.9
Or see this region's nucleotide sequence