Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2151

Experiment: Thymidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2149 and Shewana3_2150 are separated by 12 nucleotidesShewana3_2150 and Shewana3_2151 are separated by 9 nucleotidesShewana3_2151 and Shewana3_2152 are separated by 312 nucleotides Shewana3_2149: Shewana3_2149 - phosphogluconate dehydratase (RefSeq), at 2,573,951 to 2,575,777 _2149 Shewana3_2150: Shewana3_2150 - 6-phosphogluconolactonase (RefSeq), at 2,575,790 to 2,576,488 _2150 Shewana3_2151: Shewana3_2151 - glucose-6-phosphate 1-dehydrogenase (RefSeq), at 2,576,498 to 2,577,970 _2151 Shewana3_2152: Shewana3_2152 - DNA-binding transcriptional regulator HexR (RefSeq), at 2,578,283 to 2,579,137 _2152 Position (kb) 2576 2577 2578Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2575.805 kb on - strandat 2576.006 kb on - strand, within Shewana3_2150at 2576.242 kb on - strand, within Shewana3_2150at 2576.373 kb on - strand, within Shewana3_2150at 2578.001 kb on - strandat 2578.225 kb on + strandat 2578.341 kb on + strandat 2578.382 kb on - strand, within Shewana3_2152at 2578.566 kb on - strandat 2578.617 kb on + strand, within Shewana3_2152at 2578.625 kb on - strand, within Shewana3_2152at 2578.945 kb on + strand, within Shewana3_2152

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
remove
2,575,805 - +1.3
2,576,006 - Shewana3_2150 0.31 -1.6
2,576,242 - Shewana3_2150 0.65 -1.3
2,576,373 - Shewana3_2150 0.83 -0.3
2,578,001 - -0.4
2,578,225 + -1.0
2,578,341 + -3.0
2,578,382 - Shewana3_2152 0.12 +2.4
2,578,566 - -0.7
2,578,617 + Shewana3_2152 0.39 +1.6
2,578,625 - Shewana3_2152 0.40 +0.4
2,578,945 + Shewana3_2152 0.77 -2.9

Or see this region's nucleotide sequence