Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1784

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1783 and Shewana3_1784 are separated by 31 nucleotidesShewana3_1784 and Shewana3_1785 are separated by 265 nucleotides Shewana3_1783: Shewana3_1783 - BNR repeat-containing protein (RefSeq), at 2,101,710 to 2,102,720 _1783 Shewana3_1784: Shewana3_1784 - hypothetical protein (RefSeq), at 2,102,752 to 2,105,067 _1784 Shewana3_1785: Shewana3_1785 - glutamate dehydrogenase (NAD) (RefSeq), at 2,105,333 to 2,110,177 _1785 Position (kb) 2102 2103 2104 2105 2106Strain fitness (log2 ratio) -1 0 1 2 3 4at 2101.787 kb on + strandat 2102.092 kb on - strand, within Shewana3_1783at 2102.140 kb on - strand, within Shewana3_1783at 2102.375 kb on - strand, within Shewana3_1783at 2102.398 kb on + strand, within Shewana3_1783at 2102.542 kb on + strand, within Shewana3_1783at 2102.700 kb on - strandat 2102.700 kb on - strandat 2102.700 kb on - strandat 2102.922 kb on - strandat 2103.076 kb on - strand, within Shewana3_1784at 2103.151 kb on - strand, within Shewana3_1784at 2103.178 kb on + strand, within Shewana3_1784at 2103.178 kb on + strand, within Shewana3_1784at 2103.362 kb on - strand, within Shewana3_1784at 2103.505 kb on - strand, within Shewana3_1784at 2103.780 kb on + strand, within Shewana3_1784at 2103.865 kb on - strand, within Shewana3_1784at 2103.904 kb on + strand, within Shewana3_1784at 2104.188 kb on + strand, within Shewana3_1784at 2104.196 kb on - strand, within Shewana3_1784at 2104.196 kb on - strand, within Shewana3_1784at 2104.352 kb on - strand, within Shewana3_1784at 2104.415 kb on + strand, within Shewana3_1784at 2104.751 kb on + strand, within Shewana3_1784at 2104.801 kb on + strand, within Shewana3_1784at 2104.804 kb on - strand, within Shewana3_1784at 2104.858 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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2,101,787 + +0.4
2,102,092 - Shewana3_1783 0.38 -0.3
2,102,140 - Shewana3_1783 0.43 -0.2
2,102,375 - Shewana3_1783 0.66 -0.8
2,102,398 + Shewana3_1783 0.68 -0.1
2,102,542 + Shewana3_1783 0.82 -0.1
2,102,700 - -1.5
2,102,700 - +0.7
2,102,700 - +0.1
2,102,922 - +2.9
2,103,076 - Shewana3_1784 0.14 -0.3
2,103,151 - Shewana3_1784 0.17 +4.2
2,103,178 + Shewana3_1784 0.18 +1.6
2,103,178 + Shewana3_1784 0.18 +0.0
2,103,362 - Shewana3_1784 0.26 +1.4
2,103,505 - Shewana3_1784 0.33 +1.5
2,103,780 + Shewana3_1784 0.44 -0.9
2,103,865 - Shewana3_1784 0.48 -0.3
2,103,904 + Shewana3_1784 0.50 +1.6
2,104,188 + Shewana3_1784 0.62 -0.8
2,104,196 - Shewana3_1784 0.62 -1.1
2,104,196 - Shewana3_1784 0.62 +1.2
2,104,352 - Shewana3_1784 0.69 +1.2
2,104,415 + Shewana3_1784 0.72 -0.9
2,104,751 + Shewana3_1784 0.86 -0.1
2,104,801 + Shewana3_1784 0.88 +0.2
2,104,804 - Shewana3_1784 0.89 +0.1
2,104,858 + -0.5

Or see this region's nucleotide sequence