Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0642 and Shewana3_0643 are separated by 62 nucleotides Shewana3_0643 and Shewana3_0644 are separated by 407 nucleotides Shewana3_0644 and Shewana3_0645 are separated by 533 nucleotides
Shewana3_0642: Shewana3_0642 - sodium:dicarboxylate symporter (RefSeq), at 758,809 to 760,059
_0642
Shewana3_0643: Shewana3_0643 - hypothetical protein (RefSeq), at 760,122 to 760,592
_0643
Shewana3_0644: Shewana3_0644 - hypothetical protein (RefSeq), at 761,000 to 761,488
_0644
Shewana3_0645: Shewana3_0645 - hypothetical protein (RefSeq), at 762,022 to 763,014
_0645
Position (kb) 760
761
762 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 760.107 kb on + strand at 760.182 kb on + strand, within Shewana3_0643 at 760.190 kb on - strand, within Shewana3_0643 at 760.202 kb on - strand, within Shewana3_0643 at 760.202 kb on - strand, within Shewana3_0643 at 760.252 kb on + strand, within Shewana3_0643 at 760.281 kb on - strand, within Shewana3_0643 at 760.451 kb on + strand, within Shewana3_0643 at 760.517 kb on - strand, within Shewana3_0643 at 760.517 kb on - strand, within Shewana3_0643 at 760.592 kb on + strand at 760.761 kb on + strand at 760.968 kb on - strand at 760.976 kb on - strand at 761.229 kb on + strand, within Shewana3_0644 at 761.324 kb on - strand, within Shewana3_0644 at 761.325 kb on - strand, within Shewana3_0644 at 761.404 kb on - strand, within Shewana3_0644 at 761.422 kb on + strand, within Shewana3_0644 at 761.440 kb on + strand at 761.448 kb on - strand at 761.492 kb on + strand at 761.556 kb on + strand at 761.947 kb on + strand at 761.947 kb on + strand at 761.955 kb on - strand at 761.982 kb on - strand at 761.982 kb on - strand at 761.983 kb on - strand at 762.020 kb on + strand at 762.020 kb on + strand at 762.028 kb on - strand at 762.028 kb on - strand at 762.028 kb on - strand at 762.028 kb on - strand at 762.028 kb on - strand at 762.062 kb on - strand at 762.079 kb on + strand at 762.079 kb on + strand at 762.148 kb on - strand, within Shewana3_0645 at 762.161 kb on - strand, within Shewana3_0645 at 762.163 kb on - strand, within Shewana3_0645 at 762.200 kb on - strand, within Shewana3_0645 at 762.241 kb on - strand, within Shewana3_0645 at 762.261 kb on + strand, within Shewana3_0645 at 762.269 kb on - strand, within Shewana3_0645 at 762.369 kb on + strand, within Shewana3_0645 at 762.369 kb on + strand, within Shewana3_0645 at 762.369 kb on + strand, within Shewana3_0645 at 762.369 kb on + strand, within Shewana3_0645 at 762.369 kb on + strand, within Shewana3_0645 at 762.369 kb on + strand, within Shewana3_0645 at 762.377 kb on - strand, within Shewana3_0645 at 762.377 kb on - strand, within Shewana3_0645 at 762.377 kb on - strand, within Shewana3_0645 at 762.377 kb on - strand, within Shewana3_0645 at 762.377 kb on - strand, within Shewana3_0645 at 762.377 kb on - strand, within Shewana3_0645 at 762.377 kb on - strand, within Shewana3_0645 at 762.377 kb on - strand, within Shewana3_0645 at 762.398 kb on + strand, within Shewana3_0645 at 762.415 kb on + strand, within Shewana3_0645 at 762.432 kb on + strand, within Shewana3_0645 at 762.432 kb on + strand, within Shewana3_0645 at 762.437 kb on + strand, within Shewana3_0645 at 762.444 kb on + strand, within Shewana3_0645 at 762.446 kb on + strand, within Shewana3_0645 at 762.447 kb on - strand, within Shewana3_0645 at 762.454 kb on - strand, within Shewana3_0645
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 760,107 + +0.6 760,182 + Shewana3_0643 0.13 -0.2 760,190 - Shewana3_0643 0.14 +0.6 760,202 - Shewana3_0643 0.17 -0.4 760,202 - Shewana3_0643 0.17 -0.1 760,252 + Shewana3_0643 0.28 +1.4 760,281 - Shewana3_0643 0.34 -0.6 760,451 + Shewana3_0643 0.70 +1.7 760,517 - Shewana3_0643 0.84 -0.1 760,517 - Shewana3_0643 0.84 +1.3 760,592 + -0.6 760,761 + +1.3 760,968 - -0.3 760,976 - +4.4 761,229 + Shewana3_0644 0.47 -0.1 761,324 - Shewana3_0644 0.66 -0.8 761,325 - Shewana3_0644 0.66 -0.3 761,404 - Shewana3_0644 0.83 -0.7 761,422 + Shewana3_0644 0.86 +0.4 761,440 + -0.0 761,448 - +1.7 761,492 + +0.4 761,556 + -0.4 761,947 + -0.1 761,947 + +0.2 761,955 - -0.5 761,982 - +0.0 761,982 - +1.3 761,983 - -0.3 762,020 + -0.2 762,020 + -0.2 762,028 - +1.6 762,028 - -0.1 762,028 - +0.1 762,028 - +0.8 762,028 - -0.1 762,062 - -0.8 762,079 + -0.2 762,079 + -0.7 762,148 - Shewana3_0645 0.13 +0.5 762,161 - Shewana3_0645 0.14 -0.5 762,163 - Shewana3_0645 0.14 -0.1 762,200 - Shewana3_0645 0.18 +1.0 762,241 - Shewana3_0645 0.22 -0.5 762,261 + Shewana3_0645 0.24 -0.1 762,269 - Shewana3_0645 0.25 +0.7 762,369 + Shewana3_0645 0.35 -0.1 762,369 + Shewana3_0645 0.35 -0.8 762,369 + Shewana3_0645 0.35 +0.0 762,369 + Shewana3_0645 0.35 -0.9 762,369 + Shewana3_0645 0.35 +0.4 762,369 + Shewana3_0645 0.35 -0.7 762,377 - Shewana3_0645 0.36 -1.8 762,377 - Shewana3_0645 0.36 +1.5 762,377 - Shewana3_0645 0.36 -0.8 762,377 - Shewana3_0645 0.36 -0.6 762,377 - Shewana3_0645 0.36 +0.9 762,377 - Shewana3_0645 0.36 +0.4 762,377 - Shewana3_0645 0.36 +0.2 762,377 - Shewana3_0645 0.36 -0.0 762,398 + Shewana3_0645 0.38 -0.9 762,415 + Shewana3_0645 0.40 -0.2 762,432 + Shewana3_0645 0.41 +1.7 762,432 + Shewana3_0645 0.41 +0.7 762,437 + Shewana3_0645 0.42 +0.3 762,444 + Shewana3_0645 0.42 -1.0 762,446 + Shewana3_0645 0.43 +0.6 762,447 - Shewana3_0645 0.43 -0.4 762,454 - Shewana3_0645 0.44 -1.4
Or see this region's nucleotide sequence