Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0630 and Shewana3_0631 are separated by 259 nucleotides Shewana3_0631 and Shewana3_0632 are separated by 317 nucleotides
Shewana3_0630: Shewana3_0630 - no description, at 738,823 to 741,005
_0630
Shewana3_0631: Shewana3_0631 - hypothetical protein (RefSeq), at 741,265 to 741,966
_0631
Shewana3_0632: Shewana3_0632 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 742,284 to 743,582
_0632
Position (kb) 741
742 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 740.284 kb on + strand, within Shewana3_0630 at 740.309 kb on + strand, within Shewana3_0630 at 740.381 kb on - strand, within Shewana3_0630 at 740.537 kb on - strand, within Shewana3_0630 at 740.633 kb on + strand, within Shewana3_0630 at 740.703 kb on + strand, within Shewana3_0630 at 740.703 kb on + strand, within Shewana3_0630 at 740.741 kb on + strand, within Shewana3_0630 at 740.792 kb on - strand at 740.908 kb on - strand at 740.923 kb on - strand at 740.969 kb on + strand at 740.975 kb on - strand at 740.994 kb on + strand at 740.997 kb on - strand at 741.161 kb on + strand at 741.245 kb on - strand at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.433 kb on - strand, within Shewana3_0631 at 741.448 kb on - strand, within Shewana3_0631 at 741.701 kb on - strand, within Shewana3_0631 at 741.763 kb on + strand, within Shewana3_0631 at 741.848 kb on - strand, within Shewana3_0631 at 741.994 kb on + strand at 742.023 kb on - strand at 742.089 kb on - strand at 742.137 kb on - strand at 742.163 kb on + strand at 742.163 kb on + strand at 742.171 kb on - strand at 742.436 kb on - strand, within Shewana3_0632 at 742.518 kb on - strand, within Shewana3_0632 at 742.826 kb on + strand, within Shewana3_0632 at 742.893 kb on - strand, within Shewana3_0632
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 740,284 + Shewana3_0630 0.67 +1.1 740,309 + Shewana3_0630 0.68 -0.3 740,381 - Shewana3_0630 0.71 +0.1 740,537 - Shewana3_0630 0.79 +0.0 740,633 + Shewana3_0630 0.83 +1.2 740,703 + Shewana3_0630 0.86 -0.1 740,703 + Shewana3_0630 0.86 -0.5 740,741 + Shewana3_0630 0.88 -0.4 740,792 - +1.4 740,908 - -1.0 740,923 - +0.8 740,969 + -1.8 740,975 - -0.9 740,994 + -0.5 740,997 - +4.1 741,161 + +1.7 741,245 - +2.0 741,425 + Shewana3_0631 0.23 +2.3 741,425 + Shewana3_0631 0.23 +1.6 741,425 + Shewana3_0631 0.23 +1.6 741,433 - Shewana3_0631 0.24 +0.0 741,448 - Shewana3_0631 0.26 +1.6 741,701 - Shewana3_0631 0.62 +0.3 741,763 + Shewana3_0631 0.71 -0.4 741,848 - Shewana3_0631 0.83 -0.1 741,994 + +1.1 742,023 - -0.4 742,089 - +1.5 742,137 - +1.4 742,163 + +0.1 742,163 + +1.1 742,171 - -0.4 742,436 - Shewana3_0632 0.12 +1.1 742,518 - Shewana3_0632 0.18 +0.3 742,826 + Shewana3_0632 0.42 -0.2 742,893 - Shewana3_0632 0.47 -0.0
Or see this region's nucleotide sequence