Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0245 and Shewana3_0246 are separated by 206 nucleotides Shewana3_0246 and Shewana3_0247 are separated by 28 nucleotides Shewana3_0247 and Shewana3_0248 overlap by 4 nucleotides
Shewana3_0245: Shewana3_0245 - cytochrome B561 (RefSeq), at 276,543 to 277,139
_0245
Shewana3_0246: Shewana3_0246 - hypothetical protein (RefSeq), at 277,346 to 277,768
_0246
Shewana3_0247: Shewana3_0247 - hypothetical protein (RefSeq), at 277,797 to 278,285
_0247
Shewana3_0248: Shewana3_0248 - LysR family transcriptional regulator (RefSeq), at 278,282 to 279,199
_0248
Position (kb) 277
278
279 Strain fitness (log2 ratio) -1
0
1
2 at 276.836 kb on - strand, within Shewana3_0245 at 276.958 kb on + strand, within Shewana3_0245 at 276.983 kb on + strand, within Shewana3_0245 at 276.991 kb on - strand, within Shewana3_0245 at 277.052 kb on - strand, within Shewana3_0245 at 277.078 kb on - strand, within Shewana3_0245 at 277.164 kb on - strand at 277.603 kb on - strand, within Shewana3_0246 at 277.624 kb on + strand, within Shewana3_0246 at 278.004 kb on - strand, within Shewana3_0247 at 278.085 kb on - strand, within Shewana3_0247 at 278.201 kb on + strand, within Shewana3_0247 at 278.386 kb on + strand, within Shewana3_0248 at 278.485 kb on - strand, within Shewana3_0248 at 278.543 kb on + strand, within Shewana3_0248 at 278.551 kb on - strand, within Shewana3_0248 at 278.686 kb on + strand, within Shewana3_0248 at 278.694 kb on - strand, within Shewana3_0248 at 278.717 kb on - strand, within Shewana3_0248 at 278.822 kb on - strand, within Shewana3_0248 at 278.888 kb on - strand, within Shewana3_0248 at 279.115 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 276,836 - Shewana3_0245 0.49 +1.8 276,958 + Shewana3_0245 0.70 +0.3 276,983 + Shewana3_0245 0.74 +1.3 276,991 - Shewana3_0245 0.75 -0.6 277,052 - Shewana3_0245 0.85 -0.2 277,078 - Shewana3_0245 0.90 -0.4 277,164 - +1.4 277,603 - Shewana3_0246 0.61 +1.9 277,624 + Shewana3_0246 0.66 -0.1 278,004 - Shewana3_0247 0.42 -0.0 278,085 - Shewana3_0247 0.59 -1.6 278,201 + Shewana3_0247 0.83 -0.1 278,386 + Shewana3_0248 0.11 -0.4 278,485 - Shewana3_0248 0.22 -0.4 278,543 + Shewana3_0248 0.28 -1.1 278,551 - Shewana3_0248 0.29 -0.5 278,686 + Shewana3_0248 0.44 +1.5 278,694 - Shewana3_0248 0.45 +0.0 278,717 - Shewana3_0248 0.47 +0.2 278,822 - Shewana3_0248 0.59 +1.5 278,888 - Shewana3_0248 0.66 -0.4 279,115 + -0.4
Or see this region's nucleotide sequence