Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0064 and Shewana3_0065 are separated by 88 nucleotides Shewana3_0065 and Shewana3_0066 are separated by 58 nucleotides
Shewana3_0064: Shewana3_0064 - major facilitator transporter (RefSeq), at 74,297 to 75,745
_0064
Shewana3_0065: Shewana3_0065 - LacI family transcription regulator (RefSeq), at 75,834 to 76,862
_0065
Shewana3_0066: Shewana3_0066 - sucrose phosphorylase (RefSeq), at 76,921 to 78,405
_0066
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 74.962 kb on + strand, within Shewana3_0064 at 74.989 kb on - strand, within Shewana3_0064 at 75.005 kb on + strand, within Shewana3_0064 at 75.011 kb on + strand, within Shewana3_0064 at 75.019 kb on - strand, within Shewana3_0064 at 75.026 kb on + strand, within Shewana3_0064 at 75.045 kb on + strand, within Shewana3_0064 at 75.133 kb on + strand, within Shewana3_0064 at 75.300 kb on - strand, within Shewana3_0064 at 75.338 kb on + strand, within Shewana3_0064 at 75.369 kb on + strand, within Shewana3_0064 at 75.382 kb on - strand, within Shewana3_0064 at 75.425 kb on + strand, within Shewana3_0064 at 75.425 kb on + strand, within Shewana3_0064 at 75.437 kb on + strand, within Shewana3_0064 at 75.548 kb on + strand, within Shewana3_0064 at 75.556 kb on - strand, within Shewana3_0064 at 75.764 kb on + strand at 75.764 kb on + strand at 75.764 kb on + strand at 75.772 kb on - strand at 75.972 kb on - strand, within Shewana3_0065 at 76.018 kb on - strand, within Shewana3_0065 at 76.054 kb on + strand, within Shewana3_0065 at 76.054 kb on + strand, within Shewana3_0065 at 76.121 kb on - strand, within Shewana3_0065 at 76.327 kb on + strand, within Shewana3_0065 at 76.461 kb on + strand, within Shewana3_0065 at 76.461 kb on + strand, within Shewana3_0065 at 76.504 kb on + strand, within Shewana3_0065 at 76.506 kb on - strand, within Shewana3_0065 at 76.510 kb on + strand, within Shewana3_0065 at 76.594 kb on + strand, within Shewana3_0065 at 76.743 kb on - strand, within Shewana3_0065 at 76.839 kb on - strand at 76.863 kb on - strand at 76.929 kb on + strand at 77.030 kb on - strand at 77.086 kb on - strand, within Shewana3_0066 at 77.146 kb on + strand, within Shewana3_0066 at 77.212 kb on - strand, within Shewana3_0066 at 77.263 kb on + strand, within Shewana3_0066 at 77.273 kb on + strand, within Shewana3_0066 at 77.276 kb on - strand, within Shewana3_0066 at 77.283 kb on - strand, within Shewana3_0066 at 77.435 kb on - strand, within Shewana3_0066 at 77.582 kb on - strand, within Shewana3_0066 at 77.638 kb on - strand, within Shewana3_0066 at 77.647 kb on + strand, within Shewana3_0066
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 74,962 + Shewana3_0064 0.46 +1.3 74,989 - Shewana3_0064 0.48 +2.3 75,005 + Shewana3_0064 0.49 -0.4 75,011 + Shewana3_0064 0.49 -0.5 75,019 - Shewana3_0064 0.50 -0.1 75,026 + Shewana3_0064 0.50 +0.5 75,045 + Shewana3_0064 0.52 +1.0 75,133 + Shewana3_0064 0.58 -0.7 75,300 - Shewana3_0064 0.69 +0.2 75,338 + Shewana3_0064 0.72 -0.2 75,369 + Shewana3_0064 0.74 -0.9 75,382 - Shewana3_0064 0.75 -0.5 75,425 + Shewana3_0064 0.78 +0.8 75,425 + Shewana3_0064 0.78 -0.8 75,437 + Shewana3_0064 0.79 +1.3 75,548 + Shewana3_0064 0.86 +0.2 75,556 - Shewana3_0064 0.87 +0.3 75,764 + -0.6 75,764 + -1.9 75,764 + +1.1 75,772 - +0.4 75,972 - Shewana3_0065 0.13 -1.0 76,018 - Shewana3_0065 0.18 -2.4 76,054 + Shewana3_0065 0.21 +0.4 76,054 + Shewana3_0065 0.21 +0.4 76,121 - Shewana3_0065 0.28 +0.4 76,327 + Shewana3_0065 0.48 -1.8 76,461 + Shewana3_0065 0.61 -0.3 76,461 + Shewana3_0065 0.61 +0.4 76,504 + Shewana3_0065 0.65 -2.0 76,506 - Shewana3_0065 0.65 -1.3 76,510 + Shewana3_0065 0.66 +0.5 76,594 + Shewana3_0065 0.74 -1.0 76,743 - Shewana3_0065 0.88 -1.1 76,839 - -1.3 76,863 - -0.3 76,929 + +1.4 77,030 - -0.3 77,086 - Shewana3_0066 0.11 -0.2 77,146 + Shewana3_0066 0.15 -1.7 77,212 - Shewana3_0066 0.20 +0.9 77,263 + Shewana3_0066 0.23 +4.0 77,273 + Shewana3_0066 0.24 -0.6 77,276 - Shewana3_0066 0.24 +0.7 77,283 - Shewana3_0066 0.24 -0.7 77,435 - Shewana3_0066 0.35 +0.6 77,582 - Shewana3_0066 0.45 +0.8 77,638 - Shewana3_0066 0.48 -1.0 77,647 + Shewana3_0066 0.49 -0.6
Or see this region's nucleotide sequence