Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0015

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0014 and Shewana3_0015 are separated by 158 nucleotidesShewana3_0015 and glyS are separated by 63 nucleotides Shewana3_0014: Shewana3_0014 - transcriptional regulator (RefSeq), at 16,699 to 17,547 _0014 Shewana3_0015: Shewana3_0015 - putative signal transduction protein (RefSeq), at 17,706 to 18,749 _0015 Shewana3_0016: glyS - glycyl-tRNA synthetase subunit beta (RefSeq), at 18,813 to 20,879 glyS Position (kb) 17 18 19Strain fitness (log2 ratio) -1 0 1 2 3 4at 16.824 kb on - strand, within Shewana3_0014at 16.980 kb on - strand, within Shewana3_0014at 16.982 kb on + strand, within Shewana3_0014at 16.990 kb on - strand, within Shewana3_0014at 17.244 kb on - strand, within Shewana3_0014at 17.361 kb on + strand, within Shewana3_0014at 17.412 kb on - strand, within Shewana3_0014at 17.523 kb on + strandat 17.589 kb on - strandat 17.845 kb on + strand, within Shewana3_0015at 17.876 kb on + strand, within Shewana3_0015at 18.064 kb on - strand, within Shewana3_0015at 18.125 kb on + strand, within Shewana3_0015at 18.161 kb on + strand, within Shewana3_0015at 18.161 kb on + strand, within Shewana3_0015at 18.204 kb on - strand, within Shewana3_0015at 18.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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16,824 - Shewana3_0014 0.15 +0.2
16,980 - Shewana3_0014 0.33 +1.8
16,982 + Shewana3_0014 0.33 -0.7
16,990 - Shewana3_0014 0.34 +1.1
17,244 - Shewana3_0014 0.64 -0.8
17,361 + Shewana3_0014 0.78 +1.2
17,412 - Shewana3_0014 0.84 +0.9
17,523 + -0.7
17,589 - +1.6
17,845 + Shewana3_0015 0.13 +1.1
17,876 + Shewana3_0015 0.16 -0.6
18,064 - Shewana3_0015 0.34 +0.2
18,125 + Shewana3_0015 0.40 +1.9
18,161 + Shewana3_0015 0.44 -0.7
18,161 + Shewana3_0015 0.44 +4.3
18,204 - Shewana3_0015 0.48 +0.2
18,672 - +1.4

Or see this region's nucleotide sequence