Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4333 and Shewana3_4334 are separated by 31 nucleotides Shewana3_4334 and Shewana3_4335 are separated by 27 nucleotides Shewana3_4335 and Shewana3_4336 are separated by 122 nucleotides Shewana3_4336 and Shewana3_4337 are separated by 2 nucleotides Shewana3_4337 and Shewana3_4338 are separated by 186 nucleotides
Shewana3_4333: Shewana3_4333 - methionine-R-sulfoxide reductase (RefSeq), at 222,837 to 223,277
_4333
Shewana3_4334: Shewana3_4334 - glutaredoxin (RefSeq), at 223,309 to 223,545
_4334
Shewana3_4335: Shewana3_4335 - peptide methionine sulfoxide reductase (RefSeq), at 223,573 to 224,061
_4335
Shewana3_4336: Shewana3_4336 - AraC family transcriptional regulator (RefSeq), at 224,184 to 225,119
_4336
Shewana3_4337: Shewana3_4337 - hypothetical protein (RefSeq), at 225,122 to 225,862
_4337
Shewana3_4338: Shewana3_4338 - hypothetical protein (RefSeq), at 226,049 to 226,336
_4338
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 223.239 kb on - strand at 223.673 kb on + strand, within Shewana3_4335 at 223.681 kb on - strand, within Shewana3_4335 at 223.782 kb on - strand, within Shewana3_4335 at 223.791 kb on + strand, within Shewana3_4335 at 223.997 kb on + strand, within Shewana3_4335 at 224.005 kb on - strand, within Shewana3_4335 at 224.155 kb on + strand at 224.220 kb on - strand at 224.245 kb on - strand at 224.398 kb on + strand, within Shewana3_4336 at 224.403 kb on + strand, within Shewana3_4336 at 224.406 kb on - strand, within Shewana3_4336 at 224.416 kb on - strand, within Shewana3_4336 at 224.600 kb on + strand, within Shewana3_4336 at 224.600 kb on + strand, within Shewana3_4336 at 224.606 kb on - strand, within Shewana3_4336 at 224.758 kb on - strand, within Shewana3_4336 at 224.859 kb on - strand, within Shewana3_4336 at 224.874 kb on + strand, within Shewana3_4336 at 224.923 kb on - strand, within Shewana3_4336 at 225.087 kb on - strand at 225.133 kb on + strand at 225.140 kb on + strand at 225.201 kb on - strand, within Shewana3_4337 at 225.300 kb on + strand, within Shewana3_4337 at 225.305 kb on + strand, within Shewana3_4337 at 225.402 kb on + strand, within Shewana3_4337 at 225.410 kb on - strand, within Shewana3_4337 at 225.410 kb on - strand, within Shewana3_4337 at 225.422 kb on + strand, within Shewana3_4337 at 225.592 kb on + strand, within Shewana3_4337 at 225.600 kb on - strand, within Shewana3_4337 at 225.699 kb on + strand, within Shewana3_4337 at 225.724 kb on - strand, within Shewana3_4337 at 225.724 kb on - strand, within Shewana3_4337 at 225.751 kb on - strand, within Shewana3_4337 at 225.856 kb on + strand at 225.997 kb on + strand at 226.004 kb on - strand at 226.116 kb on + strand, within Shewana3_4338
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 223,239 - -0.2 223,673 + Shewana3_4335 0.20 +0.7 223,681 - Shewana3_4335 0.22 -0.3 223,782 - Shewana3_4335 0.43 +1.4 223,791 + Shewana3_4335 0.45 +0.6 223,997 + Shewana3_4335 0.87 -0.3 224,005 - Shewana3_4335 0.88 +1.4 224,155 + +1.5 224,220 - +1.1 224,245 - -1.0 224,398 + Shewana3_4336 0.23 +1.2 224,403 + Shewana3_4336 0.23 +0.1 224,406 - Shewana3_4336 0.24 +0.3 224,416 - Shewana3_4336 0.25 -0.7 224,600 + Shewana3_4336 0.44 +1.6 224,600 + Shewana3_4336 0.44 +1.2 224,606 - Shewana3_4336 0.45 +0.4 224,758 - Shewana3_4336 0.61 +1.5 224,859 - Shewana3_4336 0.72 +2.2 224,874 + Shewana3_4336 0.74 -2.7 224,923 - Shewana3_4336 0.79 -0.6 225,087 - -0.7 225,133 + +0.0 225,140 + -0.4 225,201 - Shewana3_4337 0.11 -1.3 225,300 + Shewana3_4337 0.24 -0.0 225,305 + Shewana3_4337 0.25 -0.3 225,402 + Shewana3_4337 0.38 -0.4 225,410 - Shewana3_4337 0.39 +1.2 225,410 - Shewana3_4337 0.39 -1.1 225,422 + Shewana3_4337 0.40 -0.8 225,592 + Shewana3_4337 0.63 -0.5 225,600 - Shewana3_4337 0.65 +0.2 225,699 + Shewana3_4337 0.78 -0.4 225,724 - Shewana3_4337 0.81 -0.3 225,724 - Shewana3_4337 0.81 +4.1 225,751 - Shewana3_4337 0.85 +2.2 225,856 + -0.8 225,997 + +0.2 226,004 - +0.3 226,116 + Shewana3_4338 0.23 +0.2
Or see this region's nucleotide sequence