Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4332 and Shewana3_4333 are separated by 54 nucleotides Shewana3_4333 and Shewana3_4334 are separated by 31 nucleotides Shewana3_4334 and Shewana3_4335 are separated by 27 nucleotides Shewana3_4335 and Shewana3_4336 are separated by 122 nucleotides
Shewana3_4332: Shewana3_4332 - hypothetical protein (RefSeq), at 222,537 to 222,782
_4332
Shewana3_4333: Shewana3_4333 - methionine-R-sulfoxide reductase (RefSeq), at 222,837 to 223,277
_4333
Shewana3_4334: Shewana3_4334 - glutaredoxin (RefSeq), at 223,309 to 223,545
_4334
Shewana3_4335: Shewana3_4335 - peptide methionine sulfoxide reductase (RefSeq), at 223,573 to 224,061
_4335
Shewana3_4336: Shewana3_4336 - AraC family transcriptional regulator (RefSeq), at 224,184 to 225,119
_4336
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 222.616 kb on - strand, within Shewana3_4332 at 222.641 kb on + strand, within Shewana3_4332 at 222.641 kb on + strand, within Shewana3_4332 at 222.763 kb on - strand at 222.763 kb on - strand at 222.822 kb on - strand at 222.865 kb on - strand at 222.890 kb on + strand, within Shewana3_4333 at 222.890 kb on + strand, within Shewana3_4333 at 222.898 kb on - strand, within Shewana3_4333 at 222.898 kb on - strand, within Shewana3_4333 at 222.988 kb on + strand, within Shewana3_4333 at 223.010 kb on - strand, within Shewana3_4333 at 223.092 kb on + strand, within Shewana3_4333 at 223.239 kb on - strand at 223.673 kb on + strand, within Shewana3_4335 at 223.681 kb on - strand, within Shewana3_4335 at 223.782 kb on - strand, within Shewana3_4335 at 223.791 kb on + strand, within Shewana3_4335 at 223.997 kb on + strand, within Shewana3_4335 at 224.005 kb on - strand, within Shewana3_4335 at 224.155 kb on + strand at 224.220 kb on - strand at 224.245 kb on - strand at 224.398 kb on + strand, within Shewana3_4336 at 224.403 kb on + strand, within Shewana3_4336 at 224.406 kb on - strand, within Shewana3_4336 at 224.416 kb on - strand, within Shewana3_4336 at 224.600 kb on + strand, within Shewana3_4336 at 224.600 kb on + strand, within Shewana3_4336 at 224.606 kb on - strand, within Shewana3_4336 at 224.758 kb on - strand, within Shewana3_4336 at 224.859 kb on - strand, within Shewana3_4336 at 224.874 kb on + strand, within Shewana3_4336 at 224.923 kb on - strand, within Shewana3_4336
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 222,616 - Shewana3_4332 0.32 +0.3 222,641 + Shewana3_4332 0.42 -0.8 222,641 + Shewana3_4332 0.42 +0.3 222,763 - -0.5 222,763 - +0.5 222,822 - -0.5 222,865 - -1.1 222,890 + Shewana3_4333 0.12 +1.0 222,890 + Shewana3_4333 0.12 -0.6 222,898 - Shewana3_4333 0.14 -0.4 222,898 - Shewana3_4333 0.14 -1.0 222,988 + Shewana3_4333 0.34 +1.2 223,010 - Shewana3_4333 0.39 -0.5 223,092 + Shewana3_4333 0.58 -0.7 223,239 - -0.2 223,673 + Shewana3_4335 0.20 +0.7 223,681 - Shewana3_4335 0.22 -0.3 223,782 - Shewana3_4335 0.43 +1.4 223,791 + Shewana3_4335 0.45 +0.6 223,997 + Shewana3_4335 0.87 -0.3 224,005 - Shewana3_4335 0.88 +1.4 224,155 + +1.5 224,220 - +1.1 224,245 - -1.0 224,398 + Shewana3_4336 0.23 +1.2 224,403 + Shewana3_4336 0.23 +0.1 224,406 - Shewana3_4336 0.24 +0.3 224,416 - Shewana3_4336 0.25 -0.7 224,600 + Shewana3_4336 0.44 +1.6 224,600 + Shewana3_4336 0.44 +1.2 224,606 - Shewana3_4336 0.45 +0.4 224,758 - Shewana3_4336 0.61 +1.5 224,859 - Shewana3_4336 0.72 +2.2 224,874 + Shewana3_4336 0.74 -2.7 224,923 - Shewana3_4336 0.79 -0.6
Or see this region's nucleotide sequence