Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4293

Experiment: Thymidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4292 and Shewana3_4293 are separated by 456 nucleotidesShewana3_4293 and Shewana3_4294 are separated by 465 nucleotidesShewana3_4294 and Shewana3_4295 are separated by 169 nucleotides Shewana3_4292: Shewana3_4292 - hypothetical protein (RefSeq), at 174,969 to 175,514 _4292 Shewana3_4293: Shewana3_4293 - outer membrane porin (RefSeq), at 175,971 to 177,167 _4293 Shewana3_4294: Shewana3_4294 - hypothetical protein (RefSeq), at 177,633 to 177,914 _4294 Shewana3_4295: Shewana3_4295 - sensor kinase CusS (RefSeq), at 178,084 to 179,559 _4295 Position (kb) 175 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 174.985 kb on - strandat 175.005 kb on - strandat 175.025 kb on - strand, within Shewana3_4292at 175.025 kb on - strand, within Shewana3_4292at 175.027 kb on + strand, within Shewana3_4292at 175.115 kb on + strand, within Shewana3_4292at 175.161 kb on - strand, within Shewana3_4292at 175.168 kb on + strandat 175.212 kb on + strand, within Shewana3_4292at 175.230 kb on - strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.260 kb on - strand, within Shewana3_4292at 175.306 kb on + strand, within Shewana3_4292at 175.388 kb on + strand, within Shewana3_4292at 175.396 kb on - strand, within Shewana3_4292at 175.411 kb on + strand, within Shewana3_4292at 175.421 kb on - strand, within Shewana3_4292at 175.466 kb on + strandat 175.515 kb on + strandat 175.523 kb on - strandat 175.528 kb on - strandat 175.608 kb on - strandat 175.637 kb on - strandat 175.683 kb on - strandat 175.685 kb on + strandat 175.691 kb on - strandat 175.697 kb on - strandat 175.710 kb on + strandat 175.718 kb on - strandat 175.993 kb on + strandat 176.001 kb on - strandat 176.003 kb on + strandat 176.011 kb on - strandat 176.036 kb on + strandat 176.059 kb on - strandat 176.072 kb on - strandat 176.177 kb on + strand, within Shewana3_4293at 176.190 kb on + strand, within Shewana3_4293at 176.196 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.197 kb on + strand, within Shewana3_4293at 176.198 kb on - strand, within Shewana3_4293at 176.228 kb on + strand, within Shewana3_4293at 176.262 kb on - strand, within Shewana3_4293at 176.267 kb on - strand, within Shewana3_4293at 176.268 kb on - strand, within Shewana3_4293at 176.309 kb on + strand, within Shewana3_4293at 176.515 kb on + strand, within Shewana3_4293at 176.681 kb on + strand, within Shewana3_4293at 176.759 kb on + strand, within Shewana3_4293at 176.874 kb on - strandat 176.875 kb on + strand, within Shewana3_4293at 176.876 kb on + strand, within Shewana3_4293at 176.876 kb on + strand, within Shewana3_4293at 176.888 kb on + strand, within Shewana3_4293at 176.896 kb on - strand, within Shewana3_4293at 176.910 kb on - strand, within Shewana3_4293at 176.943 kb on + strand, within Shewana3_4293at 176.951 kb on - strand, within Shewana3_4293at 176.951 kb on - strand, within Shewana3_4293at 176.999 kb on - strand, within Shewana3_4293at 177.001 kb on + strand, within Shewana3_4293at 177.153 kb on + strandat 177.161 kb on + strandat 177.234 kb on + strandat 177.234 kb on + strandat 177.254 kb on - strandat 177.349 kb on + strandat 177.373 kb on + strandat 177.373 kb on + strandat 177.373 kb on + strandat 177.373 kb on + strandat 177.381 kb on - strandat 177.381 kb on - strandat 177.381 kb on - strandat 177.381 kb on - strandat 177.391 kb on - strandat 177.391 kb on - strandat 177.391 kb on - strandat 177.563 kb on - strandat 177.563 kb on - strandat 177.656 kb on + strandat 177.664 kb on - strand, within Shewana3_4294at 177.817 kb on + strand, within Shewana3_4294at 177.928 kb on - strandat 178.039 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
remove
174,985 - +1.1
175,005 - -1.2
175,025 - Shewana3_4292 0.10 +1.4
175,025 - Shewana3_4292 0.10 -0.2
175,027 + Shewana3_4292 0.11 +3.3
175,115 + Shewana3_4292 0.27 +0.7
175,161 - Shewana3_4292 0.35 +0.2
175,168 + +1.4
175,212 + Shewana3_4292 0.45 -1.2
175,230 - Shewana3_4292 0.48 -0.2
175,252 + Shewana3_4292 0.52 -1.0
175,252 + Shewana3_4292 0.52 -1.2
175,252 + Shewana3_4292 0.52 -1.0
175,252 + Shewana3_4292 0.52 +1.3
175,260 - Shewana3_4292 0.53 -0.6
175,306 + Shewana3_4292 0.62 +0.1
175,388 + Shewana3_4292 0.77 +1.4
175,396 - Shewana3_4292 0.78 -0.2
175,411 + Shewana3_4292 0.81 +0.3
175,421 - Shewana3_4292 0.83 +0.3
175,466 + -0.2
175,515 + -0.5
175,523 - -0.3
175,528 - -0.5
175,608 - +0.8
175,637 - -0.1
175,683 - +1.9
175,685 + -0.2
175,691 - +0.4
175,697 - +0.7
175,710 + +0.4
175,718 - +1.8
175,993 + -0.7
176,001 - +1.8
176,003 + +0.2
176,011 - -0.8
176,036 + +3.8
176,059 - -0.7
176,072 - +0.3
176,177 + Shewana3_4293 0.17 +1.5
176,190 + Shewana3_4293 0.18 -0.1
176,196 + Shewana3_4293 0.19 -0.4
176,197 + Shewana3_4293 0.19 +4.3
176,197 + Shewana3_4293 0.19 -0.2
176,197 + Shewana3_4293 0.19 +1.8
176,197 + Shewana3_4293 0.19 -0.2
176,197 + Shewana3_4293 0.19 -0.3
176,197 + Shewana3_4293 0.19 -1.1
176,198 - Shewana3_4293 0.19 +0.8
176,228 + Shewana3_4293 0.21 +1.6
176,262 - Shewana3_4293 0.24 -2.6
176,267 - Shewana3_4293 0.25 -0.0
176,268 - Shewana3_4293 0.25 +0.8
176,309 + Shewana3_4293 0.28 +0.0
176,515 + Shewana3_4293 0.45 +0.2
176,681 + Shewana3_4293 0.59 -0.0
176,759 + Shewana3_4293 0.66 -0.3
176,874 - +2.8
176,875 + Shewana3_4293 0.76 -0.3
176,876 + Shewana3_4293 0.76 -0.2
176,876 + Shewana3_4293 0.76 +1.7
176,888 + Shewana3_4293 0.77 +0.8
176,896 - Shewana3_4293 0.77 +0.9
176,910 - Shewana3_4293 0.78 +1.3
176,943 + Shewana3_4293 0.81 +1.1
176,951 - Shewana3_4293 0.82 +1.7
176,951 - Shewana3_4293 0.82 +0.5
176,999 - Shewana3_4293 0.86 +0.2
177,001 + Shewana3_4293 0.86 -1.1
177,153 + -2.0
177,161 + +1.7
177,234 + +0.0
177,234 + -0.1
177,254 - -0.6
177,349 + +0.1
177,373 + +1.5
177,373 + -0.2
177,373 + +0.4
177,373 + -0.4
177,381 - -1.2
177,381 - +0.2
177,381 - -0.3
177,381 - +0.0
177,391 - -2.2
177,391 - +0.3
177,391 - -0.5
177,563 - +0.8
177,563 - +1.2
177,656 + +0.2
177,664 - Shewana3_4294 0.11 -1.2
177,817 + Shewana3_4294 0.65 -0.0
177,928 - +0.7
178,039 + +0.1

Or see this region's nucleotide sequence