Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4210

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4208 and Shewana3_4209 overlap by 20 nucleotidesShewana3_4209 and Shewana3_4210 are separated by 74 nucleotidesShewana3_4210 and Shewana3_4211 are separated by 141 nucleotidesShewana3_4211 and Shewana3_4212 overlap by 4 nucleotides Shewana3_4208: Shewana3_4208 - hypothetical protein (RefSeq), at 76,728 to 78,023 _4208 Shewana3_4209: Shewana3_4209 - Type IV secretory pathway protease TraF-like protein (RefSeq), at 78,004 to 78,510 _4209 Shewana3_4210: Shewana3_4210 - hypothetical protein (RefSeq), at 78,585 to 79,010 _4210 Shewana3_4211: Shewana3_4211 - hypothetical protein (RefSeq), at 79,152 to 79,604 _4211 Shewana3_4212: Shewana3_4212 - hypothetical protein (RefSeq), at 79,601 to 80,062 _4212 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 77.742 kb on - strand, within Shewana3_4208at 77.851 kb on - strand, within Shewana3_4208at 77.854 kb on - strand, within Shewana3_4208at 77.856 kb on - strand, within Shewana3_4208at 78.081 kb on + strand, within Shewana3_4209at 78.081 kb on + strand, within Shewana3_4209at 78.089 kb on - strand, within Shewana3_4209at 78.120 kb on - strand, within Shewana3_4209at 78.210 kb on + strand, within Shewana3_4209at 78.210 kb on + strand, within Shewana3_4209at 78.218 kb on - strand, within Shewana3_4209at 78.316 kb on - strand, within Shewana3_4209at 78.491 kb on + strandat 78.774 kb on + strand, within Shewana3_4210at 78.900 kb on - strand, within Shewana3_4210at 78.900 kb on - strand, within Shewana3_4210at 79.020 kb on - strandat 79.055 kb on - strandat 79.282 kb on - strand, within Shewana3_4211at 79.499 kb on - strand, within Shewana3_4211at 79.499 kb on - strand, within Shewana3_4211at 79.499 kb on - strand, within Shewana3_4211at 79.612 kb on - strandat 79.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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77,742 - Shewana3_4208 0.78 +3.8
77,851 - Shewana3_4208 0.87 +1.1
77,854 - Shewana3_4208 0.87 -0.1
77,856 - Shewana3_4208 0.87 -0.4
78,081 + Shewana3_4209 0.15 -0.2
78,081 + Shewana3_4209 0.15 -0.6
78,089 - Shewana3_4209 0.17 -0.8
78,120 - Shewana3_4209 0.23 -1.4
78,210 + Shewana3_4209 0.41 -0.2
78,210 + Shewana3_4209 0.41 +1.1
78,218 - Shewana3_4209 0.42 +0.2
78,316 - Shewana3_4209 0.62 -1.2
78,491 + +1.0
78,774 + Shewana3_4210 0.44 -0.7
78,900 - Shewana3_4210 0.74 -2.2
78,900 - Shewana3_4210 0.74 -0.0
79,020 - -0.2
79,055 - +2.3
79,282 - Shewana3_4211 0.29 +0.4
79,499 - Shewana3_4211 0.77 -0.6
79,499 - Shewana3_4211 0.77 -1.3
79,499 - Shewana3_4211 0.77 -0.4
79,612 - -2.1
79,614 - +1.4

Or see this region's nucleotide sequence