Experiment: constant light control second sampling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0657 and Synpcc7942_0658 are separated by 169 nucleotides Synpcc7942_0658 and Synpcc7942_0659 are separated by 83 nucleotides Synpcc7942_0659 and tyrA are separated by 6 nucleotides tyrA and Synpcc7942_0661 are separated by 16 nucleotides
Synpcc7942_0657: Synpcc7942_0657 - hypothetical protein, at 653,047 to 653,388
_0657
Synpcc7942_0658: Synpcc7942_0658 - hypothetical protein, at 653,558 to 653,770
_0658
Synpcc7942_0659: Synpcc7942_0659 - Rad3-related DNA helicases-like, at 653,854 to 655,275
_0659
Synpcc7942_0660: tyrA - arogenate dehydrogenase, at 655,282 to 656,253
tyrA
Synpcc7942_0661: Synpcc7942_0661 - hypothetical protein, at 656,270 to 657,874
_0661
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 652.876 kb on - strand at 652.892 kb on - strand at 652.980 kb on - strand at 652.989 kb on - strand at 652.997 kb on + strand at 653.060 kb on - strand at 653.127 kb on - strand, within Synpcc7942_0657 at 653.362 kb on + strand at 653.404 kb on - strand at 653.520 kb on + strand at 653.520 kb on + strand at 653.523 kb on - strand at 653.542 kb on + strand at 653.557 kb on - strand at 653.579 kb on + strand at 653.587 kb on - strand, within Synpcc7942_0658 at 653.587 kb on - strand, within Synpcc7942_0658 at 653.587 kb on - strand at 653.589 kb on + strand, within Synpcc7942_0658 at 653.794 kb on + strand at 653.807 kb on + strand at 653.821 kb on + strand at 653.859 kb on - strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.887 kb on - strand at 653.898 kb on + strand at 653.898 kb on + strand at 653.914 kb on + strand at 653.916 kb on - strand at 654.002 kb on - strand, within Synpcc7942_0659 at 654.043 kb on + strand, within Synpcc7942_0659 at 654.129 kb on + strand, within Synpcc7942_0659 at 654.134 kb on + strand, within Synpcc7942_0659 at 654.137 kb on - strand, within Synpcc7942_0659 at 654.147 kb on - strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.195 kb on + strand, within Synpcc7942_0659 at 654.203 kb on - strand, within Synpcc7942_0659 at 654.203 kb on - strand, within Synpcc7942_0659 at 654.212 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.243 kb on + strand, within Synpcc7942_0659 at 654.251 kb on - strand, within Synpcc7942_0659 at 654.315 kb on - strand, within Synpcc7942_0659 at 654.317 kb on - strand, within Synpcc7942_0659 at 654.334 kb on + strand, within Synpcc7942_0659 at 654.336 kb on + strand, within Synpcc7942_0659 at 654.356 kb on + strand, within Synpcc7942_0659 at 654.364 kb on - strand, within Synpcc7942_0659 at 654.369 kb on - strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.415 kb on + strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.478 kb on - strand, within Synpcc7942_0659 at 654.491 kb on + strand, within Synpcc7942_0659 at 654.515 kb on + strand, within Synpcc7942_0659 at 654.534 kb on - strand, within Synpcc7942_0659 at 654.547 kb on - strand, within Synpcc7942_0659 at 654.548 kb on - strand, within Synpcc7942_0659 at 654.562 kb on + strand, within Synpcc7942_0659 at 654.562 kb on + strand, within Synpcc7942_0659 at 654.615 kb on - strand, within Synpcc7942_0659 at 654.615 kb on - strand at 654.626 kb on + strand, within Synpcc7942_0659 at 654.634 kb on - strand, within Synpcc7942_0659 at 654.634 kb on - strand, within Synpcc7942_0659 at 654.639 kb on - strand, within Synpcc7942_0659 at 654.671 kb on - strand, within Synpcc7942_0659 at 654.672 kb on - strand, within Synpcc7942_0659 at 654.687 kb on + strand, within Synpcc7942_0659 at 654.754 kb on - strand, within Synpcc7942_0659 at 654.755 kb on - strand, within Synpcc7942_0659 at 654.762 kb on + strand, within Synpcc7942_0659 at 654.780 kb on + strand, within Synpcc7942_0659 at 654.785 kb on + strand, within Synpcc7942_0659 at 654.825 kb on - strand, within Synpcc7942_0659 at 654.832 kb on + strand, within Synpcc7942_0659 at 654.840 kb on - strand, within Synpcc7942_0659 at 654.844 kb on + strand, within Synpcc7942_0659 at 654.846 kb on - strand at 654.868 kb on + strand, within Synpcc7942_0659 at 654.876 kb on - strand, within Synpcc7942_0659 at 654.878 kb on + strand, within Synpcc7942_0659 at 654.886 kb on - strand, within Synpcc7942_0659 at 654.886 kb on - strand, within Synpcc7942_0659 at 654.891 kb on - strand, within Synpcc7942_0659 at 654.898 kb on - strand, within Synpcc7942_0659 at 654.997 kb on + strand, within Synpcc7942_0659 at 654.997 kb on + strand, within Synpcc7942_0659 at 655.011 kb on + strand, within Synpcc7942_0659 at 655.011 kb on + strand, within Synpcc7942_0659 at 655.011 kb on + strand, within Synpcc7942_0659 at 655.019 kb on + strand, within Synpcc7942_0659 at 655.019 kb on - strand, within Synpcc7942_0659 at 655.019 kb on - strand, within Synpcc7942_0659 at 655.070 kb on + strand, within Synpcc7942_0659 at 655.120 kb on + strand, within Synpcc7942_0659 at 655.125 kb on + strand, within Synpcc7942_0659 at 655.125 kb on + strand, within Synpcc7942_0659 at 655.125 kb on + strand, within Synpcc7942_0659 at 655.133 kb on - strand at 655.133 kb on - strand at 655.133 kb on - strand at 655.134 kb on - strand at 655.154 kb on - strand at 655.157 kb on + strand at 655.174 kb on + strand at 655.184 kb on + strand at 655.186 kb on + strand at 655.186 kb on + strand at 655.186 kb on + strand at 655.191 kb on + strand at 655.194 kb on - strand at 655.194 kb on - strand at 655.194 kb on - strand at 655.194 kb on - strand at 655.222 kb on + strand at 655.238 kb on - strand at 655.238 kb on - strand at 655.269 kb on + strand at 655.282 kb on - strand at 655.290 kb on + strand at 655.299 kb on + strand at 655.299 kb on + strand at 655.357 kb on - strand at 655.412 kb on + strand, within tyrA at 655.417 kb on - strand, within tyrA at 656.248 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction constant light control second sampling remove 652,876 - -1.3 652,892 - +1.7 652,980 - +0.3 652,989 - +0.2 652,997 + +0.5 653,060 - -0.3 653,127 - Synpcc7942_0657 0.23 -0.6 653,362 + -0.4 653,404 - -1.6 653,520 + +0.5 653,520 + -0.3 653,523 - -0.1 653,542 + -0.5 653,557 - -0.7 653,579 + +0.2 653,587 - Synpcc7942_0658 0.14 +1.0 653,587 - Synpcc7942_0658 0.14 +0.2 653,587 - -0.7 653,589 + Synpcc7942_0658 0.15 -0.5 653,794 + +0.3 653,807 + +0.4 653,821 + -0.2 653,859 - -0.5 653,879 + +0.0 653,879 + -0.1 653,879 + -0.7 653,879 + -1.2 653,879 + -0.7 653,887 - -0.9 653,898 + -0.9 653,898 + -0.8 653,914 + +0.5 653,916 - +0.1 654,002 - Synpcc7942_0659 0.10 -0.6 654,043 + Synpcc7942_0659 0.13 -0.3 654,129 + Synpcc7942_0659 0.19 -1.0 654,134 + Synpcc7942_0659 0.20 -0.8 654,137 - Synpcc7942_0659 0.20 -0.3 654,147 - Synpcc7942_0659 0.21 +0.7 654,174 + Synpcc7942_0659 0.23 -1.5 654,174 + Synpcc7942_0659 0.23 +0.5 654,174 + Synpcc7942_0659 0.23 +0.1 654,182 - Synpcc7942_0659 0.23 +0.0 654,182 - Synpcc7942_0659 0.23 -1.4 654,182 - Synpcc7942_0659 0.23 -1.9 654,195 + Synpcc7942_0659 0.24 +0.4 654,203 - Synpcc7942_0659 0.25 -1.0 654,203 - Synpcc7942_0659 0.25 -0.4 654,212 + Synpcc7942_0659 0.25 -3.0 654,222 + Synpcc7942_0659 0.26 -1.3 654,222 + Synpcc7942_0659 0.26 -2.0 654,222 + Synpcc7942_0659 0.26 -0.8 654,243 + Synpcc7942_0659 0.27 -0.4 654,251 - Synpcc7942_0659 0.28 -0.2 654,315 - Synpcc7942_0659 0.32 -1.3 654,317 - Synpcc7942_0659 0.33 -1.9 654,334 + Synpcc7942_0659 0.34 -0.9 654,336 + Synpcc7942_0659 0.34 -1.3 654,356 + Synpcc7942_0659 0.35 -0.2 654,364 - Synpcc7942_0659 0.36 -0.9 654,369 - Synpcc7942_0659 0.36 -0.7 654,410 + Synpcc7942_0659 0.39 -1.1 654,410 + Synpcc7942_0659 0.39 -0.7 654,410 + Synpcc7942_0659 0.39 -0.4 654,410 + Synpcc7942_0659 0.39 -0.4 654,410 + Synpcc7942_0659 0.39 -1.3 654,410 + Synpcc7942_0659 0.39 -0.6 654,410 + Synpcc7942_0659 0.39 -1.1 654,410 + Synpcc7942_0659 0.39 -0.7 654,415 + Synpcc7942_0659 0.39 -0.5 654,418 - Synpcc7942_0659 0.40 -0.8 654,418 - -0.5 654,418 - Synpcc7942_0659 0.40 +0.1 654,418 - Synpcc7942_0659 0.40 +0.3 654,418 - Synpcc7942_0659 0.40 +0.1 654,418 - Synpcc7942_0659 0.40 -0.1 654,418 - Synpcc7942_0659 0.40 -0.8 654,478 - Synpcc7942_0659 0.44 -1.3 654,491 + Synpcc7942_0659 0.45 -1.9 654,515 + Synpcc7942_0659 0.46 -2.8 654,534 - Synpcc7942_0659 0.48 -0.6 654,547 - Synpcc7942_0659 0.49 +0.5 654,548 - Synpcc7942_0659 0.49 -0.4 654,562 + Synpcc7942_0659 0.50 -1.4 654,562 + Synpcc7942_0659 0.50 -0.6 654,615 - Synpcc7942_0659 0.54 -0.4 654,615 - -0.5 654,626 + Synpcc7942_0659 0.54 -0.9 654,634 - Synpcc7942_0659 0.55 -0.5 654,634 - Synpcc7942_0659 0.55 -1.0 654,639 - Synpcc7942_0659 0.55 +1.2 654,671 - Synpcc7942_0659 0.57 -2.5 654,672 - Synpcc7942_0659 0.58 -1.0 654,687 + Synpcc7942_0659 0.59 -0.6 654,754 - Synpcc7942_0659 0.63 -1.5 654,755 - Synpcc7942_0659 0.63 -0.7 654,762 + Synpcc7942_0659 0.64 -0.3 654,780 + Synpcc7942_0659 0.65 -0.8 654,785 + Synpcc7942_0659 0.65 -0.2 654,825 - Synpcc7942_0659 0.68 +0.5 654,832 + Synpcc7942_0659 0.69 -0.9 654,840 - Synpcc7942_0659 0.69 -1.7 654,844 + Synpcc7942_0659 0.70 -0.0 654,846 - -1.7 654,868 + Synpcc7942_0659 0.71 -1.5 654,876 - Synpcc7942_0659 0.72 -0.3 654,878 + Synpcc7942_0659 0.72 -1.9 654,886 - Synpcc7942_0659 0.73 -0.8 654,886 - Synpcc7942_0659 0.73 -1.3 654,891 - Synpcc7942_0659 0.73 -0.3 654,898 - Synpcc7942_0659 0.73 -0.6 654,997 + Synpcc7942_0659 0.80 -0.8 654,997 + Synpcc7942_0659 0.80 -1.2 655,011 + Synpcc7942_0659 0.81 -1.7 655,011 + Synpcc7942_0659 0.81 -1.2 655,011 + Synpcc7942_0659 0.81 -1.2 655,019 + Synpcc7942_0659 0.82 -0.6 655,019 - Synpcc7942_0659 0.82 -1.1 655,019 - Synpcc7942_0659 0.82 +0.8 655,070 + Synpcc7942_0659 0.86 -0.5 655,120 + Synpcc7942_0659 0.89 -1.7 655,125 + Synpcc7942_0659 0.89 -0.0 655,125 + Synpcc7942_0659 0.89 -0.9 655,125 + Synpcc7942_0659 0.89 -1.1 655,133 - -0.9 655,133 - -1.8 655,133 - -0.8 655,134 - +0.4 655,154 - -0.7 655,157 + -1.1 655,174 + -0.7 655,184 + -0.4 655,186 + +0.4 655,186 + -2.3 655,186 + -1.1 655,191 + -1.4 655,194 - -2.7 655,194 - +0.2 655,194 - -0.1 655,194 - -1.3 655,222 + -0.3 655,238 - -0.1 655,238 - -1.5 655,269 + -0.2 655,282 - -1.0 655,290 + -0.9 655,299 + -1.8 655,299 + -0.5 655,357 - -0.6 655,412 + tyrA Synpcc7942_0660 0.13 -0.4 655,417 - tyrA Synpcc7942_0660 0.14 +0.6 656,248 + +0.2
Or see this region's nucleotide sequence