Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13170

Experiment: R2A with Aluminum chloride 1.5625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Aluminum chloride 1.5625 mM
2,948,114	-		LRK54_RS13165	0.20	+0.1
2,948,114	-		LRK54_RS13165	0.20	+0.7
2,948,126	+		LRK54_RS13165	0.21	+0.3
2,948,126	+		LRK54_RS13165	0.21	+0.3
2,948,198	+		LRK54_RS13165	0.27	+0.2
2,948,198	+		LRK54_RS13165	0.27	-0.0
2,948,198	+		LRK54_RS13165	0.27	-0.9
2,948,199	-		LRK54_RS13165	0.27	-0.5
2,948,199	-		LRK54_RS13165	0.27	-0.1
2,948,199	-		LRK54_RS13165	0.27	-0.2
2,948,291	+		LRK54_RS13165	0.34	+0.5
2,948,291	+		LRK54_RS13165	0.34	-0.3
2,948,291	+		LRK54_RS13165	0.34	-1.2
2,948,291	+		LRK54_RS13165	0.34	-1.7
2,948,330	+		LRK54_RS13165	0.38	+1.2
2,948,330	+		LRK54_RS13165	0.38	-0.4
2,948,330	+		LRK54_RS13165	0.38	+1.0
2,948,330	+		LRK54_RS13165	0.38	-1.5
2,948,330	+		LRK54_RS13165	0.38	-0.1
2,948,330	+		LRK54_RS13165	0.38	+0.5
2,948,331	-		LRK54_RS13165	0.38	+1.3
2,948,331	-		LRK54_RS13165	0.38	-1.5
2,948,331	-		LRK54_RS13165	0.38	+0.9
2,948,331	-		LRK54_RS13165	0.38	-0.7
2,948,468	-		LRK54_RS13165	0.49	-1.5
2,948,492	+		LRK54_RS13165	0.50	+0.1
2,948,570	+		LRK54_RS13165	0.57	+1.4
2,948,654	+		LRK54_RS13165	0.63	-0.6
2,948,654	+		LRK54_RS13165	0.63	+1.3
2,948,654	+		LRK54_RS13165	0.63	-0.4
2,948,654	+		LRK54_RS13165	0.63	+0.1
2,948,654	+		LRK54_RS13165	0.63	+1.1
2,948,654	+		LRK54_RS13165	0.63	-1.0
2,948,655	-		LRK54_RS13165	0.63	-1.1
2,948,747	+		LRK54_RS13165	0.71	-1.5
2,948,756	+		LRK54_RS13165	0.72	+0.2
2,948,756	+		LRK54_RS13165	0.72	-0.3
2,948,756	+		LRK54_RS13165	0.72	-0.8
2,948,756	+		LRK54_RS13165	0.72	+0.3
2,948,756	+		LRK54_RS13165	0.72	-1.7
2,948,757	-		LRK54_RS13165	0.72	+0.6
2,948,757	-		LRK54_RS13165	0.72	+0.0
2,948,757	-		LRK54_RS13165	0.72	+0.1
2,948,757	-		LRK54_RS13165	0.72	-1.0
2,948,757	-		LRK54_RS13165	0.72	+1.4
2,948,757	-		LRK54_RS13165	0.72	+0.9
2,948,757	-		LRK54_RS13165	0.72	-0.1
2,948,757	-		LRK54_RS13165	0.72	-0.3
2,948,757	-		LRK54_RS13165	0.72	-0.2
2,948,757	-		LRK54_RS13165	0.72	-1.3
2,948,757	-		LRK54_RS13165	0.72	-1.4
2,949,030	-				-0.5
2,949,081	+				+0.3
2,949,139	+				+1.0
2,949,139	+				+0.4
2,949,140	+				-0.1
2,949,140	-				-1.7
2,949,214	+		LRK54_RS13170	0.10	+0.2
2,949,215	-		LRK54_RS13170	0.11	+0.6
2,949,215	-		LRK54_RS13170	0.11	-0.0
2,949,265	+		LRK54_RS13170	0.14	-0.0
2,949,265	+		LRK54_RS13170	0.14	+0.4
2,949,265	+		LRK54_RS13170	0.14	+2.0
2,949,265	+		LRK54_RS13170	0.14	+0.6
2,949,265	+		LRK54_RS13170	0.14	-0.7
2,949,265	+		LRK54_RS13170	0.14	-1.2
2,949,265	+		LRK54_RS13170	0.14	-1.4
2,949,265	+		LRK54_RS13170	0.14	+0.5
2,949,265	+		LRK54_RS13170	0.14	+0.7
2,949,265	+		LRK54_RS13170	0.14	+0.5
2,949,265	+		LRK54_RS13170	0.14	-0.7
2,949,266	-		LRK54_RS13170	0.14	-0.6
2,949,266	-		LRK54_RS13170	0.14	-0.7
2,949,266	-		LRK54_RS13170	0.14	-0.9
2,949,266	-		LRK54_RS13170	0.14	+0.4
2,949,266	-		LRK54_RS13170	0.14	+0.6
2,949,266	-		LRK54_RS13170	0.14	+0.2
2,949,266	-		LRK54_RS13170	0.14	-0.9
2,949,266	-		LRK54_RS13170	0.14	-0.3
2,949,266	-		LRK54_RS13170	0.14	-1.1
2,949,271	+		LRK54_RS13170	0.14	-0.2
2,949,271	+		LRK54_RS13170	0.14	-1.1
2,949,271	+		LRK54_RS13170	0.14	-0.4
2,949,271	+		LRK54_RS13170	0.14	-0.2
2,949,272	-		LRK54_RS13170	0.14	-0.5
2,949,272	-		LRK54_RS13170	0.14	-0.8
2,949,397	+		LRK54_RS13170	0.22	-0.3
2,949,397	+		LRK54_RS13170	0.22	-0.5
2,949,398	-		LRK54_RS13170	0.22	-0.0
2,949,521	-		LRK54_RS13170	0.29	-0.4
2,949,733	+		LRK54_RS13170	0.42	-0.6
2,949,733	+		LRK54_RS13170	0.42	-2.3
2,949,733	+		LRK54_RS13170	0.42	+1.8
2,949,733	+		LRK54_RS13170	0.42	-0.3
2,949,734	-		LRK54_RS13170	0.42	+0.5
2,949,734	-		LRK54_RS13170	0.42	-1.8
2,949,734	-		LRK54_RS13170	0.42	-0.6
2,949,734	-		LRK54_RS13170	0.42	+0.9
2,949,734	-		LRK54_RS13170	0.42	+0.9
2,949,740	-		LRK54_RS13170	0.43	-0.6
2,949,740	-		LRK54_RS13170	0.43	-0.6
2,949,748	+		LRK54_RS13170	0.43	-1.0
2,949,748	+		LRK54_RS13170	0.43	-0.7
2,949,748	+		LRK54_RS13170	0.43	-1.2
2,949,748	+		LRK54_RS13170	0.43	-0.4
2,949,748	+		LRK54_RS13170	0.43	-1.4
2,949,749	-		LRK54_RS13170	0.43	-0.4
2,949,749	-		LRK54_RS13170	0.43	-1.0
2,949,782	+		LRK54_RS13170	0.45	-0.0
2,949,866	-		LRK54_RS13170	0.50	-0.7
2,950,207	+		LRK54_RS13170	0.71	-1.3
2,950,207	+		LRK54_RS13170	0.71	-2.5
2,950,208	-		LRK54_RS13170	0.71	+0.1
2,950,208	-		LRK54_RS13170	0.71	+0.3
2,950,208	-		LRK54_RS13170	0.71	-0.1
2,950,255	+		LRK54_RS13170	0.74	-0.6
2,950,255	+		LRK54_RS13170	0.74	-0.9
2,950,255	+		LRK54_RS13170	0.74	-1.1
2,950,255	+		LRK54_RS13170	0.74	-0.7
2,950,255	+		LRK54_RS13170	0.74	+0.2
2,950,256	-		LRK54_RS13170	0.74	-0.3
2,950,256	-		LRK54_RS13170	0.74	+0.6
2,950,256	-		LRK54_RS13170	0.74	-0.2
2,950,256	-		LRK54_RS13170	0.74	-2.1
2,950,256	-		LRK54_RS13170	0.74	-1.4
2,950,256	-		LRK54_RS13170	0.74	-0.2
2,950,257	+		LRK54_RS13170	0.74	-0.6
2,950,281	+		LRK54_RS13170	0.76	-0.9
2,950,281	+		LRK54_RS13170	0.76	-1.6
2,950,282	-		LRK54_RS13170	0.76	+0.5
2,950,294	+		LRK54_RS13170	0.77	-1.7
2,950,295	-		LRK54_RS13170	0.77	-0.7
2,950,295	-		LRK54_RS13170	0.77	-0.7
2,950,295	-		LRK54_RS13170	0.77	-1.1
2,950,295	-		LRK54_RS13170	0.77	-0.1
2,950,309	+		LRK54_RS13170	0.77	-1.5
2,950,310	-		LRK54_RS13170	0.77	+0.4
2,950,310	-		LRK54_RS13170	0.77	+0.4
2,950,432	+		LRK54_RS13170	0.85	-0.6
2,950,433	-		LRK54_RS13170	0.85	-0.1
2,950,433	-		LRK54_RS13170	0.85	-0.2
2,950,433	-		LRK54_RS13170	0.85	+0.3
2,950,438	+		LRK54_RS13170	0.85	+0.4
2,950,438	+		LRK54_RS13170	0.85	-1.3
2,950,438	+		LRK54_RS13170	0.85	+0.1
2,950,438	+		LRK54_RS13170	0.85	-1.6
2,950,439	-		LRK54_RS13170	0.85	-0.3
2,950,439	-		LRK54_RS13170	0.85	+0.2
2,950,517	+				-0.7
2,950,702	+				+0.5
2,950,702	+				-0.6
2,950,702	+				-0.1
2,950,702	+				+1.0
2,950,702	+				+2.0
2,950,702	+				-0.2
2,950,702	+				+0.6
2,950,702	+				-0.6
2,950,702	+				-0.1
2,950,702	+				-0.3
2,950,702	+				-0.1
2,950,702	+				-0.9
2,950,702	+				-1.5
2,950,702	+				-0.9
2,950,703	-				-0.5
2,950,703	-				+0.2
2,950,703	-				+0.3
2,950,703	-				-0.3
2,950,703	-				-2.3
2,950,703	-				-1.4
2,950,703	-				-0.1
2,950,703	-				-3.4
2,950,804	-		LRK54_RS13175	0.11	+0.3
2,950,843	+		LRK54_RS13175	0.14	-0.2
2,950,843	+		LRK54_RS13175	0.14	+2.2
2,950,843	+		LRK54_RS13175	0.14	+1.1
2,950,843	+		LRK54_RS13175	0.14	-0.4
2,950,843	+		LRK54_RS13175	0.14	-0.5
2,950,843	+		LRK54_RS13175	0.14	+0.4
2,950,843	+		LRK54_RS13175	0.14	-0.2
2,950,843	+		LRK54_RS13175	0.14	+0.4
2,950,843	+		LRK54_RS13175	0.14	-0.3
2,950,843	+		LRK54_RS13175	0.14	-0.1
2,950,843	+		LRK54_RS13175	0.14	-0.3
2,950,843	+		LRK54_RS13175	0.14	+0.8
2,950,843	+		LRK54_RS13175	0.14	-0.7
2,950,843	+		LRK54_RS13175	0.14	+0.7
2,950,843	+		LRK54_RS13175	0.14	-1.2
2,950,843	+		LRK54_RS13175	0.14	-1.2
2,950,843	+		LRK54_RS13175	0.14	-1.2
2,950,843	+		LRK54_RS13175	0.14	+0.1
2,950,843	+		LRK54_RS13175	0.14	-0.7
2,950,843	+		LRK54_RS13175	0.14	-0.5
2,950,843	+		LRK54_RS13175	0.14	+2.4
2,950,844	-		LRK54_RS13175	0.14	-1.1
2,950,844	-		LRK54_RS13175	0.14	-1.6
2,950,844	-		LRK54_RS13175	0.14	-1.3
2,950,844	-		LRK54_RS13175	0.14	-0.2
2,950,844	-		LRK54_RS13175	0.14	+0.6
2,950,844	-		LRK54_RS13175	0.14	-0.8
2,950,844	-		LRK54_RS13175	0.14	-0.3
2,950,844	-		LRK54_RS13175	0.14	-1.1
2,950,844	-		LRK54_RS13175	0.14	-0.7
2,950,844	-		LRK54_RS13175	0.14	+0.8
2,950,844	-		LRK54_RS13175	0.14	-1.0
2,950,844	-		LRK54_RS13175	0.14	-0.6
2,950,844	-		LRK54_RS13175	0.14	-0.3
2,950,844	-		LRK54_RS13175	0.14	-0.2
2,950,844	-		LRK54_RS13175	0.14	-0.4
2,950,844	-		LRK54_RS13175	0.14	-1.7
2,950,844	-		LRK54_RS13175	0.14	+0.2
2,950,887	+		LRK54_RS13175	0.18	-0.7
2,950,887	+		LRK54_RS13175	0.18	+0.7
2,950,887	+		LRK54_RS13175	0.18	+0.4
2,950,887	+		LRK54_RS13175	0.18	-2.6
2,950,887	+		LRK54_RS13175	0.18	-0.2
2,950,887	+		LRK54_RS13175	0.18	+0.3
2,950,888	-		LRK54_RS13175	0.18	-1.9
2,950,888	-		LRK54_RS13175	0.18	-0.8
2,950,888	-		LRK54_RS13175	0.18	+0.1
2,950,888	-		LRK54_RS13175	0.18	-0.1
2,950,888	-		LRK54_RS13175	0.18	+1.2
2,950,888	-		LRK54_RS13175	0.18	-0.6
2,950,888	-		LRK54_RS13175	0.18	-0.2
2,950,888	-		LRK54_RS13175	0.18	-1.1
2,950,941	+		LRK54_RS13175	0.22	+0.9
2,950,941	+		LRK54_RS13175	0.22	-0.4
2,950,941	+		LRK54_RS13175	0.22	-1.3
2,950,941	+		LRK54_RS13175	0.22	-1.5
2,950,941	+		LRK54_RS13175	0.22	-0.6
2,950,941	+		LRK54_RS13175	0.22	-0.7
2,950,941	+		LRK54_RS13175	0.22	-0.3
2,950,941	+		LRK54_RS13175	0.22	+0.1
2,950,941	+		LRK54_RS13175	0.22	-1.5
2,950,941	+		LRK54_RS13175	0.22	-0.4
2,950,942	-		LRK54_RS13175	0.22	-0.4
2,950,942	-		LRK54_RS13175	0.22	-0.5
2,950,942	-		LRK54_RS13175	0.22	-0.5
2,950,942	-		LRK54_RS13175	0.22	-0.1
2,950,942	-		LRK54_RS13175	0.22	+1.2
2,950,942	-		LRK54_RS13175	0.22	+0.4
2,950,942	-		LRK54_RS13175	0.22	-0.7
2,950,942	-		LRK54_RS13175	0.22	+0.4
2,950,942	-		LRK54_RS13175	0.22	+0.2
2,950,942	-		LRK54_RS13175	0.22	-1.5
2,950,942	-		LRK54_RS13175	0.22	-0.8
2,951,055	+		LRK54_RS13175	0.32	-0.7
2,951,055	+		LRK54_RS13175	0.32	-0.3
2,951,056	-		LRK54_RS13175	0.32	-0.9
2,951,056	-		LRK54_RS13175	0.32	-0.9
2,951,056	-		LRK54_RS13175	0.32	-0.5
2,951,097	+		LRK54_RS13175	0.35	-0.6
2,951,098	-		LRK54_RS13175	0.35	-1.1
2,951,098	-		LRK54_RS13175	0.35	-3.5
2,951,149	+		LRK54_RS13175	0.40	+0.1
2,951,149	+		LRK54_RS13175	0.40	-0.6
2,951,149	+		LRK54_RS13175	0.40	-0.1
2,951,149	+		LRK54_RS13175	0.40	-0.8
2,951,150	-		LRK54_RS13175	0.40	+1.2
2,951,150	-		LRK54_RS13175	0.40	+0.3
2,951,150	-		LRK54_RS13175	0.40	-0.8
2,951,150	-		LRK54_RS13175	0.40	+0.4
2,951,150	-		LRK54_RS13175	0.40	+1.4
2,951,150	-		LRK54_RS13175	0.40	-0.4
2,951,171	+		LRK54_RS13175	0.42	-1.3
2,951,172	-		LRK54_RS13175	0.42	+0.9
2,951,172	-		LRK54_RS13175	0.42	-1.5
2,951,172	-		LRK54_RS13175	0.42	-1.1
2,951,183	+		LRK54_RS13175	0.43	-0.1
2,951,191	+		LRK54_RS13175	0.43	+1.4
2,951,191	+		LRK54_RS13175	0.43	-1.2
2,951,191	+		LRK54_RS13175	0.43	+0.6
2,951,192	-		LRK54_RS13175	0.43	-0.8
2,951,192	-		LRK54_RS13175	0.43	+1.2
2,951,192	-		LRK54_RS13175	0.43	-0.6
2,951,192	-		LRK54_RS13175	0.43	-0.1
2,951,602	+		LRK54_RS13175	0.78	+0.1
2,951,602	+		LRK54_RS13175	0.78	-0.4
2,951,603	-		LRK54_RS13175	0.78	-0.9
2,951,603	-		LRK54_RS13175	0.78	-0.5