Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00188

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00187 and CCNA_00188 are separated by 81 nucleotidesCCNA_00188 and CCNA_00189 are separated by 143 nucleotidesCCNA_00189 and CCNA_00190 are separated by 1 nucleotidesCCNA_00190 and CCNA_00191 are separated by 125 nucleotides CCNA_00187: CCNA_00187 - NUP-family purine nucleoside permease, at 201,599 to 202,681 _00187 CCNA_00188: CCNA_00188 - ABC transporter ATP-binding protein, at 202,763 to 203,725 _00188 CCNA_00189: CCNA_00189 - zinc-finger domain protein, at 203,869 to 204,135 _00189 CCNA_00190: CCNA_00190 - acyl-CoA hydrolase, at 204,137 to 204,571 _00190 CCNA_00191: CCNA_00191 - N-acetylglutamate synthase domain protein, at 204,697 to 205,173 _00191 Position (kb) 202 203 204Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 201.836 kb on + strand, within CCNA_00187at 201.836 kb on + strand, within CCNA_00187at 201.840 kb on - strand, within CCNA_00187at 201.853 kb on + strand, within CCNA_00187at 201.853 kb on + strand, within CCNA_00187at 201.853 kb on + strand, within CCNA_00187at 201.861 kb on - strandat 201.861 kb on - strand, within CCNA_00187at 201.863 kb on + strand, within CCNA_00187at 201.863 kb on + strand, within CCNA_00187at 201.868 kb on + strand, within CCNA_00187at 201.871 kb on - strand, within CCNA_00187at 201.895 kb on + strand, within CCNA_00187at 201.903 kb on - strand, within CCNA_00187at 201.909 kb on + strand, within CCNA_00187at 201.909 kb on + strand, within CCNA_00187at 201.917 kb on - strand, within CCNA_00187at 201.917 kb on - strand, within CCNA_00187at 201.917 kb on - strand, within CCNA_00187at 201.917 kb on - strand, within CCNA_00187at 201.921 kb on + strand, within CCNA_00187at 201.929 kb on - strand, within CCNA_00187at 201.929 kb on - strand, within CCNA_00187at 201.929 kb on - strand, within CCNA_00187at 201.929 kb on - strand, within CCNA_00187at 201.946 kb on + strand, within CCNA_00187at 201.954 kb on - strand, within CCNA_00187at 201.957 kb on + strand, within CCNA_00187at 201.957 kb on + strand, within CCNA_00187at 201.965 kb on - strand, within CCNA_00187at 201.965 kb on - strand, within CCNA_00187at 202.014 kb on + strand, within CCNA_00187at 202.014 kb on + strand, within CCNA_00187at 202.036 kb on - strand, within CCNA_00187at 202.054 kb on + strand, within CCNA_00187at 202.079 kb on - strand, within CCNA_00187at 202.099 kb on - strand, within CCNA_00187at 202.125 kb on + strand, within CCNA_00187at 202.132 kb on - strand, within CCNA_00187at 202.133 kb on - strand, within CCNA_00187at 202.135 kb on + strand, within CCNA_00187at 202.138 kb on - strand, within CCNA_00187at 202.143 kb on - strand, within CCNA_00187at 202.143 kb on - strand, within CCNA_00187at 202.153 kb on - strand, within CCNA_00187at 202.158 kb on + strand, within CCNA_00187at 202.179 kb on + strand, within CCNA_00187at 202.346 kb on - strand, within CCNA_00187at 202.349 kb on + strand, within CCNA_00187at 202.357 kb on - strand, within CCNA_00187at 202.390 kb on - strand, within CCNA_00187at 202.390 kb on - strand, within CCNA_00187at 202.438 kb on - strand, within CCNA_00187at 202.508 kb on + strand, within CCNA_00187at 202.511 kb on - strand, within CCNA_00187at 202.540 kb on - strand, within CCNA_00187at 202.557 kb on - strand, within CCNA_00187at 202.559 kb on + strand, within CCNA_00187at 202.581 kb on + strandat 202.591 kb on - strandat 202.622 kb on - strandat 202.644 kb on + strandat 202.671 kb on + strandat 202.671 kb on + strandat 202.679 kb on - strandat 202.682 kb on + strandat 202.744 kb on + strandat 202.747 kb on - strandat 202.752 kb on - strandat 202.769 kb on - strandat 202.777 kb on + strandat 202.797 kb on + strandat 202.802 kb on + strandat 202.802 kb on + strandat 202.805 kb on - strandat 202.805 kb on - strandat 202.817 kb on + strandat 202.820 kb on + strandat 202.899 kb on + strand, within CCNA_00188at 202.899 kb on + strand, within CCNA_00188at 202.899 kb on + strand, within CCNA_00188at 202.899 kb on + strand, within CCNA_00188at 202.904 kb on + strand, within CCNA_00188at 202.907 kb on - strand, within CCNA_00188at 202.912 kb on - strand, within CCNA_00188at 202.912 kb on - strand, within CCNA_00188at 202.922 kb on - strand, within CCNA_00188at 202.934 kb on + strand, within CCNA_00188at 202.967 kb on + strand, within CCNA_00188at 202.975 kb on - strand, within CCNA_00188at 202.975 kb on - strand, within CCNA_00188at 202.975 kb on - strand, within CCNA_00188at 202.994 kb on + strand, within CCNA_00188at 202.994 kb on + strand, within CCNA_00188at 203.002 kb on - strand, within CCNA_00188at 203.014 kb on + strand, within CCNA_00188at 203.033 kb on + strand, within CCNA_00188at 203.033 kb on + strand, within CCNA_00188at 203.068 kb on - strand, within CCNA_00188at 203.075 kb on - strand, within CCNA_00188at 203.107 kb on + strand, within CCNA_00188at 203.108 kb on - strand, within CCNA_00188at 203.113 kb on - strand, within CCNA_00188at 203.116 kb on + strand, within CCNA_00188at 203.116 kb on + strand, within CCNA_00188at 203.116 kb on + strand, within CCNA_00188at 203.124 kb on - strand, within CCNA_00188at 203.124 kb on - strand, within CCNA_00188at 203.132 kb on + strand, within CCNA_00188at 203.152 kb on - strand, within CCNA_00188at 203.158 kb on - strand, within CCNA_00188at 203.186 kb on - strand, within CCNA_00188at 203.187 kb on - strandat 203.197 kb on + strand, within CCNA_00188at 203.234 kb on - strand, within CCNA_00188at 203.246 kb on + strand, within CCNA_00188at 203.332 kb on + strand, within CCNA_00188at 203.332 kb on + strand, within CCNA_00188at 203.332 kb on + strand, within CCNA_00188at 203.335 kb on - strand, within CCNA_00188at 203.340 kb on - strand, within CCNA_00188at 203.340 kb on - strand, within CCNA_00188at 203.340 kb on - strand, within CCNA_00188at 203.340 kb on - strand, within CCNA_00188at 203.340 kb on - strand, within CCNA_00188at 203.370 kb on + strand, within CCNA_00188at 203.378 kb on - strand, within CCNA_00188at 203.378 kb on - strand, within CCNA_00188at 203.429 kb on - strand, within CCNA_00188at 203.434 kb on - strand, within CCNA_00188at 203.439 kb on - strand, within CCNA_00188at 203.452 kb on + strand, within CCNA_00188at 203.455 kb on - strand, within CCNA_00188at 203.510 kb on + strand, within CCNA_00188at 203.510 kb on + strand, within CCNA_00188at 203.510 kb on + strand, within CCNA_00188at 203.510 kb on + strand, within CCNA_00188at 203.510 kb on + strand, within CCNA_00188at 203.518 kb on - strand, within CCNA_00188at 203.518 kb on - strand, within CCNA_00188at 203.520 kb on + strand, within CCNA_00188at 203.520 kb on + strand, within CCNA_00188at 203.571 kb on - strand, within CCNA_00188at 203.590 kb on - strand, within CCNA_00188at 203.605 kb on - strand, within CCNA_00188at 203.626 kb on + strand, within CCNA_00188at 203.626 kb on + strand, within CCNA_00188at 203.627 kb on - strand, within CCNA_00188at 203.634 kb on - strandat 203.644 kb on - strandat 203.663 kb on - strandat 203.673 kb on + strandat 203.678 kb on + strandat 203.679 kb on + strandat 203.680 kb on - strandat 203.680 kb on - strandat 203.684 kb on + strandat 203.687 kb on - strandat 203.687 kb on - strandat 203.692 kb on - strandat 203.697 kb on - strandat 203.719 kb on + strandat 203.727 kb on - strandat 203.731 kb on + strandat 203.731 kb on + strandat 203.731 kb on + strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.772 kb on + strandat 203.773 kb on - strandat 203.810 kb on + strandat 203.818 kb on - strandat 203.818 kb on - strandat 203.885 kb on + strandat 203.986 kb on + strand, within CCNA_00189at 204.008 kb on + strand, within CCNA_00189at 204.008 kb on + strand, within CCNA_00189at 204.008 kb on + strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.102 kb on - strand, within CCNA_00189at 204.134 kb on + strandat 204.142 kb on - strandat 204.435 kb on - strand, within CCNA_00190at 204.461 kb on + strand, within CCNA_00190at 204.506 kb on - strand, within CCNA_00190at 204.561 kb on - strandat 204.583 kb on - strandat 204.703 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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201,836 + CCNA_00187 0.22 -0.4
201,836 + CCNA_00187 0.22 +3.2
201,840 - CCNA_00187 0.22 -0.6
201,853 + CCNA_00187 0.23 -1.1
201,853 + CCNA_00187 0.23 +0.0
201,853 + CCNA_00187 0.23 -3.2
201,861 - +1.6
201,861 - CCNA_00187 0.24 +0.1
201,863 + CCNA_00187 0.24 -2.9
201,863 + CCNA_00187 0.24 +2.2
201,868 + CCNA_00187 0.25 -0.7
201,871 - CCNA_00187 0.25 +0.9
201,895 + CCNA_00187 0.27 -1.0
201,903 - CCNA_00187 0.28 -0.8
201,909 + CCNA_00187 0.29 +0.8
201,909 + CCNA_00187 0.29 -0.3
201,917 - CCNA_00187 0.29 +0.6
201,917 - CCNA_00187 0.29 +1.0
201,917 - CCNA_00187 0.29 +1.8
201,917 - CCNA_00187 0.29 -1.8
201,921 + CCNA_00187 0.30 +1.3
201,929 - CCNA_00187 0.30 -3.1
201,929 - CCNA_00187 0.30 -0.4
201,929 - CCNA_00187 0.30 -0.4
201,929 - CCNA_00187 0.30 +0.2
201,946 + CCNA_00187 0.32 -0.7
201,954 - CCNA_00187 0.33 +1.1
201,957 + CCNA_00187 0.33 -0.3
201,957 + CCNA_00187 0.33 -1.4
201,965 - CCNA_00187 0.34 -0.7
201,965 - CCNA_00187 0.34 -0.2
202,014 + CCNA_00187 0.38 -0.7
202,014 + CCNA_00187 0.38 +0.3
202,036 - CCNA_00187 0.40 +1.3
202,054 + CCNA_00187 0.42 +2.0
202,079 - CCNA_00187 0.44 -1.5
202,099 - CCNA_00187 0.46 +1.8
202,125 + CCNA_00187 0.49 -0.0
202,132 - CCNA_00187 0.49 -0.6
202,133 - CCNA_00187 0.49 +1.4
202,135 + CCNA_00187 0.49 -0.7
202,138 - CCNA_00187 0.50 +0.7
202,143 - CCNA_00187 0.50 +0.2
202,143 - CCNA_00187 0.50 +1.0
202,153 - CCNA_00187 0.51 +0.7
202,158 + CCNA_00187 0.52 +0.2
202,179 + CCNA_00187 0.54 -0.4
202,346 - CCNA_00187 0.69 -2.0
202,349 + CCNA_00187 0.69 -2.0
202,357 - CCNA_00187 0.70 -1.0
202,390 - CCNA_00187 0.73 +1.0
202,390 - CCNA_00187 0.73 -0.5
202,438 - CCNA_00187 0.77 +1.3
202,508 + CCNA_00187 0.84 -0.5
202,511 - CCNA_00187 0.84 +0.1
202,540 - CCNA_00187 0.87 -0.4
202,557 - CCNA_00187 0.88 +2.0
202,559 + CCNA_00187 0.89 -0.2
202,581 + +1.1
202,591 - -0.1
202,622 - +1.7
202,644 + -1.1
202,671 + +0.0
202,671 + +0.0
202,679 - +1.0
202,682 + +0.0
202,744 + -1.2
202,747 - +1.2
202,752 - +0.1
202,769 - -1.0
202,777 + -0.9
202,797 + -1.1
202,802 + -2.8
202,802 + -1.8
202,805 - +0.3
202,805 - -0.0
202,817 + +0.1
202,820 + -2.7
202,899 + CCNA_00188 0.14 -1.7
202,899 + CCNA_00188 0.14 -2.0
202,899 + CCNA_00188 0.14 -1.6
202,899 + CCNA_00188 0.14 +1.8
202,904 + CCNA_00188 0.15 -3.8
202,907 - CCNA_00188 0.15 -4.6
202,912 - CCNA_00188 0.15 -0.9
202,912 - CCNA_00188 0.15 -0.1
202,922 - CCNA_00188 0.17 -0.2
202,934 + CCNA_00188 0.18 -0.7
202,967 + CCNA_00188 0.21 -1.9
202,975 - CCNA_00188 0.22 -2.0
202,975 - CCNA_00188 0.22 -0.5
202,975 - CCNA_00188 0.22 +0.0
202,994 + CCNA_00188 0.24 -2.7
202,994 + CCNA_00188 0.24 -1.6
203,002 - CCNA_00188 0.25 -1.3
203,014 + CCNA_00188 0.26 -3.1
203,033 + CCNA_00188 0.28 -2.7
203,033 + CCNA_00188 0.28 -2.7
203,068 - CCNA_00188 0.32 -2.2
203,075 - CCNA_00188 0.32 -1.1
203,107 + CCNA_00188 0.36 -1.7
203,108 - CCNA_00188 0.36 -2.2
203,113 - CCNA_00188 0.36 -2.0
203,116 + CCNA_00188 0.37 -1.8
203,116 + CCNA_00188 0.37 -1.7
203,116 + CCNA_00188 0.37 -2.7
203,124 - CCNA_00188 0.37 -2.6
203,124 - CCNA_00188 0.37 -2.5
203,132 + CCNA_00188 0.38 -3.4
203,152 - CCNA_00188 0.40 -0.7
203,158 - CCNA_00188 0.41 -2.4
203,186 - CCNA_00188 0.44 -0.6
203,187 - +2.9
203,197 + CCNA_00188 0.45 -1.1
203,234 - CCNA_00188 0.49 -0.8
203,246 + CCNA_00188 0.50 -3.2
203,332 + CCNA_00188 0.59 -1.8
203,332 + CCNA_00188 0.59 -4.0
203,332 + CCNA_00188 0.59 -4.5
203,335 - CCNA_00188 0.59 -1.0
203,340 - CCNA_00188 0.60 -1.2
203,340 - CCNA_00188 0.60 -1.2
203,340 - CCNA_00188 0.60 -1.0
203,340 - CCNA_00188 0.60 +0.8
203,340 - CCNA_00188 0.60 -2.8
203,370 + CCNA_00188 0.63 -0.6
203,378 - CCNA_00188 0.64 -1.9
203,378 - CCNA_00188 0.64 -0.1
203,429 - CCNA_00188 0.69 -1.2
203,434 - CCNA_00188 0.70 -2.6
203,439 - CCNA_00188 0.70 -2.9
203,452 + CCNA_00188 0.72 -0.0
203,455 - CCNA_00188 0.72 -2.0
203,510 + CCNA_00188 0.78 -2.7
203,510 + CCNA_00188 0.78 -1.6
203,510 + CCNA_00188 0.78 -1.8
203,510 + CCNA_00188 0.78 -0.4
203,510 + CCNA_00188 0.78 -2.1
203,518 - CCNA_00188 0.78 -1.1
203,518 - CCNA_00188 0.78 -2.9
203,520 + CCNA_00188 0.79 -2.5
203,520 + CCNA_00188 0.79 -2.6
203,571 - CCNA_00188 0.84 -0.8
203,590 - CCNA_00188 0.86 +0.5
203,605 - CCNA_00188 0.87 -2.1
203,626 + CCNA_00188 0.90 -2.0
203,626 + CCNA_00188 0.90 -2.6
203,627 - CCNA_00188 0.90 -1.1
203,634 - -1.1
203,644 - -0.7
203,663 - -1.8
203,673 + -1.0
203,678 + -0.7
203,679 + -2.2
203,680 - -2.6
203,680 - -0.6
203,684 + -0.7
203,687 - -2.0
203,687 - -1.7
203,692 - -0.4
203,697 - -4.2
203,719 + -0.8
203,727 - -0.8
203,731 + -0.6
203,731 + -2.0
203,731 + -2.6
203,739 - +0.6
203,739 - -0.0
203,739 - +1.6
203,739 - -0.8
203,739 - -0.0
203,739 - -1.3
203,739 - +0.7
203,739 - -0.1
203,772 + -2.3
203,773 - +0.7
203,810 + +0.0
203,818 - -0.6
203,818 - -1.0
203,885 + +1.8
203,986 + CCNA_00189 0.44 -0.0
204,008 + CCNA_00189 0.52 +1.4
204,008 + CCNA_00189 0.52 +1.6
204,008 + CCNA_00189 0.52 +2.3
204,016 - CCNA_00189 0.55 -0.2
204,102 - CCNA_00189 0.87 -2.1
204,134 + +0.5
204,142 - -1.0
204,435 - CCNA_00190 0.69 -1.4
204,461 + CCNA_00190 0.74 +1.2
204,506 - CCNA_00190 0.85 -1.6
204,561 - +0.3
204,583 - -0.0
204,703 + +1.1

Or see this region's nucleotide sequence