Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23545

Experiment: R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS23535 and CA265_RS23540 overlap by 1 nucleotidesCA265_RS23540 and CA265_RS23545 are separated by 3 nucleotidesCA265_RS23545 and CA265_RS23550 overlap by 8 nucleotidesCA265_RS23550 and CA265_RS23555 are separated by 75 nucleotides CA265_RS23535: CA265_RS23535 - NADH dehydrogenase, at 5,754,110 to 5,754,652 _RS23535 CA265_RS23540: CA265_RS23540 - NADH-quinone oxidoreductase subunit C, at 5,754,652 to 5,755,152 _RS23540 CA265_RS23545: CA265_RS23545 - NADH dehydrogenase subunit D, at 5,755,156 to 5,756,370 _RS23545 CA265_RS23550: CA265_RS23550 - NAD(P)H-dependent oxidoreductase subunit E, at 5,756,363 to 5,756,878 _RS23550 CA265_RS23555: CA265_RS23555 - NADH-quinone oxidoreductase subunit F, at 5,756,954 to 5,758,321 _RS23555 Position (kb) 5755 5756 5757Strain fitness (log2 ratio) -2 -1 0 1at 5754.617 kb on + strandat 5754.650 kb on + strandat 5755.470 kb on - strand, within CA265_RS23545at 5756.374 kb on - strandat 5756.934 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A
remove
5,754,617 + -1.5
5,754,650 + +1.3
5,755,470 - CA265_RS23545 0.26 +0.6
5,756,374 - -1.2
5,756,934 + -1.9

Or see this region's nucleotide sequence