Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23450 and CA265_RS23455 are separated by 45 nucleotides CA265_RS23455 and CA265_RS23460 are separated by 78 nucleotides CA265_RS23460 and CA265_RS23465 are separated by 349 nucleotides
CA265_RS23450: CA265_RS23450 - aspartate aminotransferase family protein, at 5,736,874 to 5,738,265
_RS23450
CA265_RS23455: CA265_RS23455 - hypothetical protein, at 5,738,311 to 5,738,613
_RS23455
CA265_RS23460: CA265_RS23460 - hypothetical protein, at 5,738,692 to 5,739,105
_RS23460
CA265_RS23465: CA265_RS23465 - threonine synthase, at 5,739,455 to 5,740,762
_RS23465
Position (kb) 5738
5739
5740 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5737.696 kb on + strand, within CA265_RS23450 at 5737.731 kb on + strand, within CA265_RS23450 at 5737.732 kb on - strand, within CA265_RS23450 at 5737.732 kb on - strand, within CA265_RS23450 at 5737.732 kb on - strand, within CA265_RS23450 at 5737.761 kb on - strand, within CA265_RS23450 at 5737.767 kb on - strand, within CA265_RS23450 at 5737.922 kb on + strand, within CA265_RS23450 at 5737.949 kb on - strand, within CA265_RS23450 at 5737.983 kb on + strand, within CA265_RS23450 at 5738.001 kb on - strand, within CA265_RS23450 at 5738.042 kb on + strand, within CA265_RS23450 at 5738.064 kb on + strand, within CA265_RS23450 at 5738.121 kb on - strand, within CA265_RS23450 at 5738.138 kb on + strand at 5738.143 kb on - strand at 5738.159 kb on - strand at 5738.276 kb on - strand at 5738.298 kb on + strand at 5738.299 kb on - strand at 5738.300 kb on + strand at 5738.332 kb on + strand at 5738.333 kb on - strand at 5738.343 kb on + strand, within CA265_RS23455 at 5738.344 kb on - strand, within CA265_RS23455 at 5738.351 kb on + strand, within CA265_RS23455 at 5738.357 kb on + strand, within CA265_RS23455 at 5738.396 kb on + strand, within CA265_RS23455 at 5738.396 kb on + strand, within CA265_RS23455 at 5738.397 kb on - strand, within CA265_RS23455 at 5738.397 kb on - strand, within CA265_RS23455 at 5738.544 kb on - strand, within CA265_RS23455 at 5738.548 kb on - strand, within CA265_RS23455 at 5738.592 kb on - strand at 5738.684 kb on + strand at 5738.684 kb on + strand at 5738.684 kb on + strand at 5738.687 kb on + strand at 5738.688 kb on - strand at 5738.688 kb on - strand at 5738.691 kb on + strand at 5738.795 kb on + strand, within CA265_RS23460 at 5738.806 kb on - strand, within CA265_RS23460 at 5738.833 kb on + strand, within CA265_RS23460 at 5738.838 kb on + strand, within CA265_RS23460 at 5738.864 kb on + strand at 5738.864 kb on + strand, within CA265_RS23460 at 5739.031 kb on - strand, within CA265_RS23460 at 5739.047 kb on + strand, within CA265_RS23460 at 5739.100 kb on - strand at 5739.100 kb on - strand at 5739.106 kb on + strand at 5739.107 kb on - strand at 5739.163 kb on + strand at 5739.264 kb on + strand at 5739.339 kb on - strand at 5739.344 kb on + strand at 5739.346 kb on + strand at 5739.350 kb on - strand at 5739.396 kb on + strand at 5739.437 kb on + strand at 5739.454 kb on - strand at 5739.457 kb on - strand at 5739.539 kb on + strand at 5739.932 kb on - strand, within CA265_RS23465 at 5739.940 kb on + strand, within CA265_RS23465 at 5739.941 kb on - strand, within CA265_RS23465 at 5739.965 kb on + strand, within CA265_RS23465 at 5740.001 kb on - strand, within CA265_RS23465 at 5740.068 kb on + strand, within CA265_RS23465
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,737,696 + CA265_RS23450 0.59 -0.6 5,737,731 + CA265_RS23450 0.62 -0.0 5,737,732 - CA265_RS23450 0.62 +0.2 5,737,732 - CA265_RS23450 0.62 -0.7 5,737,732 - CA265_RS23450 0.62 +0.3 5,737,761 - CA265_RS23450 0.64 +0.1 5,737,767 - CA265_RS23450 0.64 +0.2 5,737,922 + CA265_RS23450 0.75 -1.7 5,737,949 - CA265_RS23450 0.77 -1.1 5,737,983 + CA265_RS23450 0.80 +0.1 5,738,001 - CA265_RS23450 0.81 +1.0 5,738,042 + CA265_RS23450 0.84 +1.3 5,738,064 + CA265_RS23450 0.85 +0.0 5,738,121 - CA265_RS23450 0.90 +1.3 5,738,138 + +0.2 5,738,143 - +0.0 5,738,159 - +1.5 5,738,276 - +0.5 5,738,298 + -1.0 5,738,299 - +1.2 5,738,300 + -0.7 5,738,332 + -0.5 5,738,333 - +0.9 5,738,343 + CA265_RS23455 0.11 -0.7 5,738,344 - CA265_RS23455 0.11 -0.1 5,738,351 + CA265_RS23455 0.13 +0.7 5,738,357 + CA265_RS23455 0.15 -0.4 5,738,396 + CA265_RS23455 0.28 +0.3 5,738,396 + CA265_RS23455 0.28 +1.0 5,738,397 - CA265_RS23455 0.28 -0.8 5,738,397 - CA265_RS23455 0.28 -0.3 5,738,544 - CA265_RS23455 0.77 -1.0 5,738,548 - CA265_RS23455 0.78 +0.1 5,738,592 - -0.6 5,738,684 + -0.8 5,738,684 + -0.3 5,738,684 + -0.8 5,738,687 + -2.7 5,738,688 - -1.1 5,738,688 - +0.1 5,738,691 + -0.8 5,738,795 + CA265_RS23460 0.25 -0.1 5,738,806 - CA265_RS23460 0.28 +0.5 5,738,833 + CA265_RS23460 0.34 +1.7 5,738,838 + CA265_RS23460 0.35 -0.5 5,738,864 + -0.8 5,738,864 + CA265_RS23460 0.42 +1.4 5,739,031 - CA265_RS23460 0.82 +0.5 5,739,047 + CA265_RS23460 0.86 -0.5 5,739,100 - +0.4 5,739,100 - -1.2 5,739,106 + -0.1 5,739,107 - +0.7 5,739,163 + -2.8 5,739,264 + +0.7 5,739,339 - +0.3 5,739,344 + -0.6 5,739,346 + -1.0 5,739,350 - -0.4 5,739,396 + +0.6 5,739,437 + -0.3 5,739,454 - -0.2 5,739,457 - -0.8 5,739,539 + +1.4 5,739,932 - CA265_RS23465 0.36 -0.9 5,739,940 + CA265_RS23465 0.37 -0.6 5,739,941 - CA265_RS23465 0.37 -0.0 5,739,965 + CA265_RS23465 0.39 -0.7 5,740,001 - CA265_RS23465 0.42 -1.0 5,740,068 + CA265_RS23465 0.47 +0.3
Or see this region's nucleotide sequence