Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23300 and CA265_RS23305 are separated by 23 nucleotides CA265_RS23305 and CA265_RS23310 are separated by 82 nucleotides CA265_RS23310 and CA265_RS23315 are separated by 138 nucleotides
CA265_RS23300: CA265_RS23300 - oxidoreductase, at 5,696,536 to 5,697,621
_RS23300
CA265_RS23305: CA265_RS23305 - hypothetical protein, at 5,697,645 to 5,697,878
_RS23305
CA265_RS23310: CA265_RS23310 - polyketide cyclase, at 5,697,961 to 5,698,410
_RS23310
CA265_RS23315: CA265_RS23315 - hypothetical protein, at 5,698,549 to 5,702,277
_RS23315
Position (kb) 5697
5698
5699 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5697.033 kb on - strand, within CA265_RS23300 at 5697.063 kb on + strand, within CA265_RS23300 at 5697.068 kb on + strand, within CA265_RS23300 at 5697.069 kb on - strand, within CA265_RS23300 at 5697.086 kb on - strand, within CA265_RS23300 at 5697.086 kb on - strand, within CA265_RS23300 at 5697.126 kb on - strand, within CA265_RS23300 at 5697.126 kb on - strand, within CA265_RS23300 at 5697.178 kb on + strand, within CA265_RS23300 at 5697.181 kb on - strand, within CA265_RS23300 at 5697.184 kb on + strand, within CA265_RS23300 at 5697.184 kb on + strand, within CA265_RS23300 at 5697.229 kb on + strand, within CA265_RS23300 at 5697.230 kb on - strand, within CA265_RS23300 at 5697.230 kb on - strand, within CA265_RS23300 at 5697.363 kb on + strand, within CA265_RS23300 at 5697.364 kb on - strand, within CA265_RS23300 at 5697.386 kb on + strand, within CA265_RS23300 at 5697.447 kb on + strand, within CA265_RS23300 at 5697.511 kb on - strand, within CA265_RS23300 at 5697.527 kb on + strand at 5697.749 kb on + strand, within CA265_RS23305 at 5697.909 kb on - strand at 5697.909 kb on - strand at 5697.919 kb on + strand at 5697.974 kb on - strand at 5697.987 kb on - strand at 5698.041 kb on + strand, within CA265_RS23310 at 5698.076 kb on - strand, within CA265_RS23310 at 5698.132 kb on - strand, within CA265_RS23310 at 5698.147 kb on - strand, within CA265_RS23310 at 5698.231 kb on + strand, within CA265_RS23310 at 5698.357 kb on - strand, within CA265_RS23310 at 5698.378 kb on - strand at 5698.675 kb on - strand at 5698.721 kb on + strand at 5698.722 kb on - strand at 5698.722 kb on - strand at 5698.725 kb on + strand at 5698.726 kb on - strand at 5698.776 kb on + strand at 5698.777 kb on - strand at 5698.777 kb on - strand at 5698.788 kb on + strand at 5698.814 kb on + strand at 5698.814 kb on + strand at 5698.815 kb on - strand at 5698.835 kb on + strand at 5698.842 kb on + strand at 5698.977 kb on + strand, within CA265_RS23315 at 5698.993 kb on + strand, within CA265_RS23315 at 5699.085 kb on + strand, within CA265_RS23315 at 5699.090 kb on + strand, within CA265_RS23315 at 5699.091 kb on - strand, within CA265_RS23315 at 5699.162 kb on - strand, within CA265_RS23315 at 5699.165 kb on + strand, within CA265_RS23315 at 5699.166 kb on - strand, within CA265_RS23315 at 5699.175 kb on + strand, within CA265_RS23315 at 5699.194 kb on + strand, within CA265_RS23315 at 5699.197 kb on + strand, within CA265_RS23315 at 5699.200 kb on - strand, within CA265_RS23315 at 5699.206 kb on + strand, within CA265_RS23315 at 5699.219 kb on + strand, within CA265_RS23315 at 5699.271 kb on - strand, within CA265_RS23315 at 5699.363 kb on - strand, within CA265_RS23315 at 5699.376 kb on + strand, within CA265_RS23315
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,697,033 - CA265_RS23300 0.46 -0.3 5,697,063 + CA265_RS23300 0.49 +1.3 5,697,068 + CA265_RS23300 0.49 +0.1 5,697,069 - CA265_RS23300 0.49 -0.2 5,697,086 - CA265_RS23300 0.51 +0.6 5,697,086 - CA265_RS23300 0.51 -0.4 5,697,126 - CA265_RS23300 0.54 +1.4 5,697,126 - CA265_RS23300 0.54 +1.9 5,697,178 + CA265_RS23300 0.59 +0.8 5,697,181 - CA265_RS23300 0.59 -1.2 5,697,184 + CA265_RS23300 0.60 -0.1 5,697,184 + CA265_RS23300 0.60 -1.1 5,697,229 + CA265_RS23300 0.64 -0.1 5,697,230 - CA265_RS23300 0.64 -0.0 5,697,230 - CA265_RS23300 0.64 +0.4 5,697,363 + CA265_RS23300 0.76 -0.3 5,697,364 - CA265_RS23300 0.76 -2.0 5,697,386 + CA265_RS23300 0.78 +0.7 5,697,447 + CA265_RS23300 0.84 -1.4 5,697,511 - CA265_RS23300 0.90 -0.4 5,697,527 + +0.1 5,697,749 + CA265_RS23305 0.44 +0.3 5,697,909 - +0.5 5,697,909 - +1.3 5,697,919 + -0.0 5,697,974 - +0.2 5,697,987 - -0.9 5,698,041 + CA265_RS23310 0.18 +0.3 5,698,076 - CA265_RS23310 0.26 -0.1 5,698,132 - CA265_RS23310 0.38 -0.3 5,698,147 - CA265_RS23310 0.41 -0.6 5,698,231 + CA265_RS23310 0.60 +0.2 5,698,357 - CA265_RS23310 0.88 +1.4 5,698,378 - -1.5 5,698,675 - +0.1 5,698,721 + -1.0 5,698,722 - -0.6 5,698,722 - -1.1 5,698,725 + +0.1 5,698,726 - +0.2 5,698,776 + -1.2 5,698,777 - -0.8 5,698,777 - -0.6 5,698,788 + +0.7 5,698,814 + -0.1 5,698,814 + +0.4 5,698,815 - -1.6 5,698,835 + -0.6 5,698,842 + +0.8 5,698,977 + CA265_RS23315 0.11 -0.2 5,698,993 + CA265_RS23315 0.12 -2.1 5,699,085 + CA265_RS23315 0.14 +1.0 5,699,090 + CA265_RS23315 0.15 +0.3 5,699,091 - CA265_RS23315 0.15 +0.0 5,699,162 - CA265_RS23315 0.16 -0.6 5,699,165 + CA265_RS23315 0.17 -1.2 5,699,166 - CA265_RS23315 0.17 +0.0 5,699,175 + CA265_RS23315 0.17 -1.1 5,699,194 + CA265_RS23315 0.17 +1.2 5,699,197 + CA265_RS23315 0.17 -0.3 5,699,200 - CA265_RS23315 0.17 -0.6 5,699,206 + CA265_RS23315 0.18 +0.4 5,699,219 + CA265_RS23315 0.18 -0.0 5,699,271 - CA265_RS23315 0.19 +1.6 5,699,363 - CA265_RS23315 0.22 +1.3 5,699,376 + CA265_RS23315 0.22 -0.4
Or see this region's nucleotide sequence