Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23090 and CA265_RS23095 are separated by 219 nucleotides CA265_RS23095 and CA265_RS23100 are separated by 4 nucleotides CA265_RS23100 and CA265_RS23105 overlap by 34 nucleotides CA265_RS23105 and CA265_RS23110 are separated by 3 nucleotides
CA265_RS23090: CA265_RS23090 - transcriptional regulator, at 5,652,738 to 5,653,115
_RS23090
CA265_RS23095: CA265_RS23095 - DNA-binding response regulator, at 5,653,335 to 5,653,976
_RS23095
CA265_RS23100: CA265_RS23100 - hypothetical protein, at 5,653,981 to 5,654,772
_RS23100
CA265_RS23105: CA265_RS23105 - hypothetical protein, at 5,654,739 to 5,655,386
_RS23105
CA265_RS23110: CA265_RS23110 - hypothetical protein, at 5,655,390 to 5,655,758
_RS23110
Position (kb) 5653
5654
5655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5652.996 kb on - strand, within CA265_RS23090 at 5652.996 kb on - strand, within CA265_RS23090 at 5653.001 kb on - strand, within CA265_RS23090 at 5653.010 kb on + strand, within CA265_RS23090 at 5653.077 kb on - strand, within CA265_RS23090 at 5653.098 kb on + strand at 5653.129 kb on - strand at 5653.129 kb on - strand at 5653.131 kb on + strand at 5653.132 kb on - strand at 5653.281 kb on + strand at 5653.336 kb on + strand at 5653.366 kb on + strand at 5653.366 kb on + strand at 5653.367 kb on - strand at 5653.367 kb on - strand at 5653.367 kb on - strand at 5653.367 kb on - strand at 5653.368 kb on + strand at 5653.432 kb on - strand, within CA265_RS23095 at 5653.472 kb on + strand, within CA265_RS23095 at 5653.473 kb on - strand, within CA265_RS23095 at 5653.527 kb on + strand, within CA265_RS23095 at 5653.527 kb on + strand, within CA265_RS23095 at 5653.591 kb on + strand, within CA265_RS23095 at 5653.592 kb on - strand, within CA265_RS23095 at 5653.605 kb on + strand, within CA265_RS23095 at 5653.606 kb on - strand, within CA265_RS23095 at 5653.606 kb on - strand, within CA265_RS23095 at 5653.606 kb on - strand, within CA265_RS23095 at 5653.626 kb on + strand, within CA265_RS23095 at 5653.661 kb on - strand, within CA265_RS23095 at 5653.661 kb on - strand, within CA265_RS23095 at 5653.661 kb on - strand, within CA265_RS23095 at 5653.716 kb on - strand, within CA265_RS23095 at 5653.719 kb on + strand, within CA265_RS23095 at 5653.735 kb on - strand, within CA265_RS23095 at 5653.735 kb on - strand, within CA265_RS23095 at 5653.786 kb on - strand, within CA265_RS23095 at 5653.793 kb on + strand, within CA265_RS23095 at 5653.794 kb on - strand, within CA265_RS23095 at 5653.794 kb on - strand, within CA265_RS23095 at 5653.806 kb on + strand, within CA265_RS23095 at 5653.807 kb on - strand, within CA265_RS23095 at 5653.885 kb on - strand, within CA265_RS23095 at 5653.905 kb on + strand, within CA265_RS23095 at 5653.977 kb on - strand at 5653.977 kb on - strand at 5653.989 kb on - strand at 5654.071 kb on - strand at 5654.073 kb on - strand, within CA265_RS23100 at 5654.163 kb on + strand, within CA265_RS23100 at 5654.221 kb on - strand, within CA265_RS23100 at 5654.229 kb on + strand, within CA265_RS23100 at 5654.311 kb on + strand, within CA265_RS23100 at 5654.319 kb on - strand, within CA265_RS23100 at 5654.331 kb on + strand, within CA265_RS23100 at 5654.398 kb on + strand, within CA265_RS23100 at 5654.419 kb on + strand, within CA265_RS23100 at 5654.420 kb on - strand, within CA265_RS23100 at 5654.420 kb on - strand, within CA265_RS23100 at 5654.437 kb on - strand, within CA265_RS23100 at 5654.565 kb on + strand, within CA265_RS23100 at 5654.676 kb on - strand, within CA265_RS23100 at 5654.772 kb on + strand at 5654.784 kb on + strand at 5654.796 kb on - strand at 5654.800 kb on - strand at 5654.811 kb on + strand, within CA265_RS23105 at 5654.812 kb on - strand, within CA265_RS23105 at 5654.815 kb on - strand, within CA265_RS23105 at 5654.835 kb on + strand, within CA265_RS23105 at 5654.836 kb on - strand, within CA265_RS23105 at 5654.836 kb on - strand, within CA265_RS23105 at 5654.845 kb on + strand, within CA265_RS23105 at 5654.982 kb on + strand, within CA265_RS23105 at 5655.080 kb on + strand, within CA265_RS23105 at 5655.086 kb on - strand, within CA265_RS23105 at 5655.087 kb on + strand, within CA265_RS23105 at 5655.116 kb on + strand, within CA265_RS23105 at 5655.116 kb on + strand, within CA265_RS23105 at 5655.116 kb on + strand, within CA265_RS23105 at 5655.123 kb on - strand, within CA265_RS23105 at 5655.138 kb on - strand, within CA265_RS23105 at 5655.169 kb on - strand, within CA265_RS23105 at 5655.169 kb on - strand, within CA265_RS23105 at 5655.224 kb on + strand, within CA265_RS23105 at 5655.280 kb on + strand, within CA265_RS23105 at 5655.287 kb on + strand, within CA265_RS23105 at 5655.291 kb on + strand, within CA265_RS23105 at 5655.292 kb on - strand, within CA265_RS23105 at 5655.339 kb on + strand at 5655.368 kb on + strand at 5655.375 kb on + strand at 5655.376 kb on - strand at 5655.387 kb on + strand at 5655.387 kb on + strand at 5655.393 kb on + strand at 5655.413 kb on + strand at 5655.507 kb on + strand, within CA265_RS23110 at 5655.560 kb on + strand, within CA265_RS23110 at 5655.561 kb on - strand, within CA265_RS23110 at 5655.562 kb on + strand, within CA265_RS23110 at 5655.562 kb on + strand, within CA265_RS23110 at 5655.562 kb on + strand, within CA265_RS23110 at 5655.592 kb on + strand, within CA265_RS23110 at 5655.687 kb on + strand, within CA265_RS23110 at 5655.694 kb on + strand, within CA265_RS23110 at 5655.695 kb on - strand, within CA265_RS23110 at 5655.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,652,996 - CA265_RS23090 0.68 -1.1 5,652,996 - CA265_RS23090 0.68 -1.1 5,653,001 - CA265_RS23090 0.70 -0.2 5,653,010 + CA265_RS23090 0.72 -0.1 5,653,077 - CA265_RS23090 0.90 +0.7 5,653,098 + -0.3 5,653,129 - +0.6 5,653,129 - -0.8 5,653,131 + -2.2 5,653,132 - -0.5 5,653,281 + +0.1 5,653,336 + +0.2 5,653,366 + -0.9 5,653,366 + +0.6 5,653,367 - -0.8 5,653,367 - +0.9 5,653,367 - -0.1 5,653,367 - +0.5 5,653,368 + -0.8 5,653,432 - CA265_RS23095 0.15 -3.2 5,653,472 + CA265_RS23095 0.21 -0.1 5,653,473 - CA265_RS23095 0.21 +0.2 5,653,527 + CA265_RS23095 0.30 -0.1 5,653,527 + CA265_RS23095 0.30 +0.3 5,653,591 + CA265_RS23095 0.40 +0.0 5,653,592 - CA265_RS23095 0.40 +1.0 5,653,605 + CA265_RS23095 0.42 +0.7 5,653,606 - CA265_RS23095 0.42 +0.4 5,653,606 - CA265_RS23095 0.42 -0.2 5,653,606 - CA265_RS23095 0.42 +0.5 5,653,626 + CA265_RS23095 0.45 +0.4 5,653,661 - CA265_RS23095 0.51 +0.4 5,653,661 - CA265_RS23095 0.51 +0.5 5,653,661 - CA265_RS23095 0.51 -0.8 5,653,716 - CA265_RS23095 0.59 -0.3 5,653,719 + CA265_RS23095 0.60 -0.8 5,653,735 - CA265_RS23095 0.62 -0.9 5,653,735 - CA265_RS23095 0.62 +0.2 5,653,786 - CA265_RS23095 0.70 +0.2 5,653,793 + CA265_RS23095 0.71 -0.6 5,653,794 - CA265_RS23095 0.71 -0.7 5,653,794 - CA265_RS23095 0.71 -0.4 5,653,806 + CA265_RS23095 0.73 -0.0 5,653,807 - CA265_RS23095 0.74 +1.0 5,653,885 - CA265_RS23095 0.86 -0.6 5,653,905 + CA265_RS23095 0.89 +0.2 5,653,977 - -1.9 5,653,977 - +1.8 5,653,989 - -1.0 5,654,071 - -0.3 5,654,073 - CA265_RS23100 0.12 -1.1 5,654,163 + CA265_RS23100 0.23 -1.4 5,654,221 - CA265_RS23100 0.30 +1.2 5,654,229 + CA265_RS23100 0.31 +0.8 5,654,311 + CA265_RS23100 0.42 +0.1 5,654,319 - CA265_RS23100 0.43 +0.7 5,654,331 + CA265_RS23100 0.44 +1.4 5,654,398 + CA265_RS23100 0.53 +0.0 5,654,419 + CA265_RS23100 0.55 -0.3 5,654,420 - CA265_RS23100 0.55 -0.8 5,654,420 - CA265_RS23100 0.55 -0.2 5,654,437 - CA265_RS23100 0.58 +2.8 5,654,565 + CA265_RS23100 0.74 +2.0 5,654,676 - CA265_RS23100 0.88 +1.2 5,654,772 + -0.4 5,654,784 + -0.3 5,654,796 - +0.2 5,654,800 - +0.6 5,654,811 + CA265_RS23105 0.11 +1.8 5,654,812 - CA265_RS23105 0.11 +0.1 5,654,815 - CA265_RS23105 0.12 -0.5 5,654,835 + CA265_RS23105 0.15 -0.4 5,654,836 - CA265_RS23105 0.15 +0.3 5,654,836 - CA265_RS23105 0.15 -0.7 5,654,845 + CA265_RS23105 0.16 +0.5 5,654,982 + CA265_RS23105 0.38 -0.3 5,655,080 + CA265_RS23105 0.53 -0.8 5,655,086 - CA265_RS23105 0.54 +0.5 5,655,087 + CA265_RS23105 0.54 -0.7 5,655,116 + CA265_RS23105 0.58 -0.4 5,655,116 + CA265_RS23105 0.58 -1.0 5,655,116 + CA265_RS23105 0.58 -0.4 5,655,123 - CA265_RS23105 0.59 +0.0 5,655,138 - CA265_RS23105 0.62 -0.3 5,655,169 - CA265_RS23105 0.66 +0.2 5,655,169 - CA265_RS23105 0.66 -1.2 5,655,224 + CA265_RS23105 0.75 +0.4 5,655,280 + CA265_RS23105 0.83 -0.9 5,655,287 + CA265_RS23105 0.85 +0.0 5,655,291 + CA265_RS23105 0.85 -0.0 5,655,292 - CA265_RS23105 0.85 -0.1 5,655,339 + -0.0 5,655,368 + -0.1 5,655,375 + +0.5 5,655,376 - -0.6 5,655,387 + +0.5 5,655,387 + -0.2 5,655,393 + -0.2 5,655,413 + +0.1 5,655,507 + CA265_RS23110 0.32 +0.0 5,655,560 + CA265_RS23110 0.46 +0.7 5,655,561 - CA265_RS23110 0.46 -0.9 5,655,562 + CA265_RS23110 0.47 +0.9 5,655,562 + CA265_RS23110 0.47 -0.0 5,655,562 + CA265_RS23110 0.47 +0.0 5,655,592 + CA265_RS23110 0.55 -0.5 5,655,687 + CA265_RS23110 0.80 +0.0 5,655,694 + CA265_RS23110 0.82 -0.2 5,655,695 - CA265_RS23110 0.83 -0.5 5,655,732 - +1.7
Or see this region's nucleotide sequence