Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21590 and CA265_RS21595 are separated by 94 nucleotides CA265_RS21595 and CA265_RS21600 overlap by 11 nucleotides CA265_RS21600 and CA265_RS21605 overlap by 20 nucleotides
CA265_RS21590: CA265_RS21590 - hypothetical protein, at 5,313,822 to 5,314,187
_RS21590
CA265_RS21595: CA265_RS21595 - esterase, at 5,314,282 to 5,314,704
_RS21595
CA265_RS21600: CA265_RS21600 - hypothetical protein, at 5,314,694 to 5,315,203
_RS21600
CA265_RS21605: CA265_RS21605 - sensor histidine kinase, at 5,315,184 to 5,316,392
_RS21605
Position (kb) 5314
5315
5316 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5313.744 kb on - strand at 5313.755 kb on - strand at 5313.755 kb on - strand at 5313.764 kb on - strand at 5313.792 kb on - strand at 5313.826 kb on + strand at 5314.046 kb on - strand, within CA265_RS21590 at 5314.170 kb on - strand at 5314.186 kb on - strand at 5314.186 kb on - strand at 5314.198 kb on + strand at 5314.198 kb on + strand at 5314.199 kb on - strand at 5314.202 kb on - strand at 5314.204 kb on + strand at 5314.205 kb on - strand at 5314.296 kb on + strand at 5314.386 kb on + strand, within CA265_RS21595 at 5314.390 kb on + strand, within CA265_RS21595 at 5314.390 kb on + strand, within CA265_RS21595 at 5314.391 kb on - strand, within CA265_RS21595 at 5314.391 kb on - strand, within CA265_RS21595 at 5314.473 kb on - strand, within CA265_RS21595 at 5314.488 kb on + strand, within CA265_RS21595 at 5314.494 kb on + strand, within CA265_RS21595 at 5314.496 kb on + strand, within CA265_RS21595 at 5314.496 kb on + strand, within CA265_RS21595 at 5314.497 kb on - strand, within CA265_RS21595 at 5314.506 kb on + strand, within CA265_RS21595 at 5314.553 kb on - strand, within CA265_RS21595 at 5314.707 kb on + strand at 5314.739 kb on - strand at 5314.739 kb on - strand at 5314.844 kb on + strand, within CA265_RS21600 at 5314.849 kb on + strand, within CA265_RS21600 at 5314.920 kb on - strand, within CA265_RS21600 at 5314.947 kb on - strand, within CA265_RS21600 at 5315.014 kb on + strand, within CA265_RS21600 at 5315.015 kb on - strand, within CA265_RS21600 at 5315.045 kb on - strand, within CA265_RS21600 at 5315.045 kb on - strand, within CA265_RS21600 at 5315.055 kb on + strand, within CA265_RS21600 at 5315.055 kb on + strand, within CA265_RS21600 at 5315.061 kb on + strand, within CA265_RS21600 at 5315.062 kb on - strand, within CA265_RS21600 at 5315.155 kb on + strand at 5315.155 kb on + strand at 5315.158 kb on - strand at 5315.209 kb on - strand at 5315.221 kb on - strand at 5315.295 kb on + strand at 5315.379 kb on - strand, within CA265_RS21605 at 5315.379 kb on - strand, within CA265_RS21605 at 5315.379 kb on - strand, within CA265_RS21605 at 5315.421 kb on + strand, within CA265_RS21605 at 5315.450 kb on + strand, within CA265_RS21605 at 5315.451 kb on - strand, within CA265_RS21605 at 5315.527 kb on - strand, within CA265_RS21605 at 5315.595 kb on - strand, within CA265_RS21605 at 5315.633 kb on + strand, within CA265_RS21605 at 5315.643 kb on - strand, within CA265_RS21605 at 5315.694 kb on - strand, within CA265_RS21605 at 5315.877 kb on - strand, within CA265_RS21605 at 5315.887 kb on + strand, within CA265_RS21605 at 5315.974 kb on + strand, within CA265_RS21605 at 5316.058 kb on - strand, within CA265_RS21605 at 5316.068 kb on - strand, within CA265_RS21605 at 5316.107 kb on + strand, within CA265_RS21605 at 5316.160 kb on - strand, within CA265_RS21605 at 5316.199 kb on - strand, within CA265_RS21605
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,313,744 - +0.6 5,313,755 - -0.4 5,313,755 - +0.0 5,313,764 - +0.2 5,313,792 - +0.5 5,313,826 + -0.7 5,314,046 - CA265_RS21590 0.61 -0.7 5,314,170 - +0.3 5,314,186 - +0.8 5,314,186 - +0.1 5,314,198 + -0.9 5,314,198 + -1.1 5,314,199 - +2.1 5,314,202 - -0.3 5,314,204 + +0.1 5,314,205 - +0.2 5,314,296 + +0.1 5,314,386 + CA265_RS21595 0.25 -0.2 5,314,390 + CA265_RS21595 0.26 +0.5 5,314,390 + CA265_RS21595 0.26 +0.6 5,314,391 - CA265_RS21595 0.26 -2.7 5,314,391 - CA265_RS21595 0.26 -1.0 5,314,473 - CA265_RS21595 0.45 +0.3 5,314,488 + CA265_RS21595 0.49 +1.5 5,314,494 + CA265_RS21595 0.50 +0.4 5,314,496 + CA265_RS21595 0.51 -0.2 5,314,496 + CA265_RS21595 0.51 +0.4 5,314,497 - CA265_RS21595 0.51 +0.3 5,314,506 + CA265_RS21595 0.53 -0.2 5,314,553 - CA265_RS21595 0.64 +0.1 5,314,707 + +0.8 5,314,739 - +0.4 5,314,739 - -1.0 5,314,844 + CA265_RS21600 0.29 +0.4 5,314,849 + CA265_RS21600 0.30 +0.2 5,314,920 - CA265_RS21600 0.44 +0.8 5,314,947 - CA265_RS21600 0.50 -0.3 5,315,014 + CA265_RS21600 0.63 +0.2 5,315,015 - CA265_RS21600 0.63 -1.5 5,315,045 - CA265_RS21600 0.69 +1.4 5,315,045 - CA265_RS21600 0.69 +0.7 5,315,055 + CA265_RS21600 0.71 +0.3 5,315,055 + CA265_RS21600 0.71 -1.0 5,315,061 + CA265_RS21600 0.72 -0.2 5,315,062 - CA265_RS21600 0.72 +0.5 5,315,155 + +1.2 5,315,155 + -0.9 5,315,158 - +1.1 5,315,209 - -0.3 5,315,221 - -1.0 5,315,295 + -0.4 5,315,379 - CA265_RS21605 0.16 -0.1 5,315,379 - CA265_RS21605 0.16 +1.7 5,315,379 - CA265_RS21605 0.16 +1.1 5,315,421 + CA265_RS21605 0.20 +0.3 5,315,450 + CA265_RS21605 0.22 -0.4 5,315,451 - CA265_RS21605 0.22 +0.1 5,315,527 - CA265_RS21605 0.28 +0.2 5,315,595 - CA265_RS21605 0.34 +0.1 5,315,633 + CA265_RS21605 0.37 -0.1 5,315,643 - CA265_RS21605 0.38 -0.6 5,315,694 - CA265_RS21605 0.42 +1.4 5,315,877 - CA265_RS21605 0.57 +2.1 5,315,887 + CA265_RS21605 0.58 +1.7 5,315,974 + CA265_RS21605 0.65 +0.5 5,316,058 - CA265_RS21605 0.72 +1.3 5,316,068 - CA265_RS21605 0.73 -0.0 5,316,107 + CA265_RS21605 0.76 -0.2 5,316,160 - CA265_RS21605 0.81 -0.1 5,316,199 - CA265_RS21605 0.84 +0.6
Or see this region's nucleotide sequence