Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20765 and CA265_RS20770 are separated by 31 nucleotides CA265_RS20770 and CA265_RS20775 overlap by 4 nucleotides CA265_RS20775 and CA265_RS20780 are separated by 22 nucleotides CA265_RS20780 and CA265_RS20785 overlap by 4 nucleotides
CA265_RS20765: CA265_RS20765 - mobilization protein, at 5,129,112 to 5,131,145
_RS20765
CA265_RS20770: CA265_RS20770 - hypothetical protein, at 5,131,177 to 5,131,608
_RS20770
CA265_RS20775: CA265_RS20775 - hypothetical protein, at 5,131,605 to 5,132,075
_RS20775
CA265_RS20780: CA265_RS20780 - hypothetical protein, at 5,132,098 to 5,132,877
_RS20780
CA265_RS20785: CA265_RS20785 - hypothetical protein, at 5,132,874 to 5,133,194
_RS20785
Position (kb) 5131
5132
5133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5130.835 kb on + strand, within CA265_RS20765 at 5130.836 kb on - strand, within CA265_RS20765 at 5130.837 kb on - strand, within CA265_RS20765 at 5130.869 kb on - strand, within CA265_RS20765 at 5130.869 kb on - strand, within CA265_RS20765 at 5130.976 kb on - strand at 5130.993 kb on + strand at 5131.143 kb on + strand at 5131.194 kb on + strand at 5131.194 kb on + strand at 5131.209 kb on - strand at 5131.209 kb on - strand at 5131.236 kb on - strand, within CA265_RS20770 at 5131.239 kb on + strand, within CA265_RS20770 at 5131.258 kb on - strand, within CA265_RS20770 at 5131.403 kb on + strand, within CA265_RS20770 at 5131.441 kb on - strand, within CA265_RS20770 at 5131.467 kb on + strand, within CA265_RS20770 at 5131.468 kb on - strand, within CA265_RS20770 at 5131.471 kb on + strand, within CA265_RS20770 at 5131.658 kb on + strand, within CA265_RS20775 at 5131.659 kb on - strand, within CA265_RS20775 at 5131.726 kb on + strand, within CA265_RS20775 at 5131.726 kb on + strand, within CA265_RS20775 at 5131.727 kb on - strand, within CA265_RS20775 at 5131.766 kb on - strand, within CA265_RS20775 at 5131.887 kb on + strand, within CA265_RS20775 at 5131.951 kb on + strand, within CA265_RS20775 at 5131.953 kb on - strand, within CA265_RS20775 at 5132.020 kb on - strand, within CA265_RS20775 at 5132.020 kb on - strand, within CA265_RS20775 at 5132.020 kb on - strand, within CA265_RS20775 at 5132.020 kb on - strand, within CA265_RS20775 at 5132.097 kb on + strand at 5132.098 kb on - strand at 5132.173 kb on - strand at 5132.238 kb on - strand, within CA265_RS20780 at 5132.283 kb on - strand, within CA265_RS20780 at 5132.283 kb on - strand, within CA265_RS20780 at 5132.283 kb on - strand, within CA265_RS20780 at 5132.289 kb on - strand, within CA265_RS20780 at 5132.404 kb on - strand, within CA265_RS20780 at 5132.452 kb on + strand, within CA265_RS20780 at 5132.452 kb on + strand, within CA265_RS20780 at 5132.464 kb on - strand, within CA265_RS20780 at 5132.470 kb on + strand, within CA265_RS20780 at 5132.471 kb on - strand, within CA265_RS20780 at 5132.493 kb on + strand, within CA265_RS20780 at 5132.500 kb on + strand, within CA265_RS20780 at 5132.532 kb on + strand, within CA265_RS20780 at 5132.533 kb on - strand, within CA265_RS20780 at 5132.648 kb on + strand, within CA265_RS20780 at 5132.707 kb on + strand, within CA265_RS20780 at 5132.707 kb on + strand, within CA265_RS20780 at 5132.708 kb on - strand, within CA265_RS20780 at 5132.708 kb on - strand, within CA265_RS20780 at 5132.728 kb on - strand, within CA265_RS20780 at 5132.728 kb on - strand, within CA265_RS20780 at 5132.729 kb on + strand, within CA265_RS20780 at 5132.729 kb on + strand, within CA265_RS20780 at 5132.763 kb on + strand, within CA265_RS20780 at 5132.768 kb on + strand, within CA265_RS20780 at 5132.809 kb on + strand at 5132.922 kb on + strand, within CA265_RS20785 at 5132.923 kb on - strand, within CA265_RS20785 at 5132.947 kb on - strand, within CA265_RS20785
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,130,835 + CA265_RS20765 0.85 +1.1 5,130,836 - CA265_RS20765 0.85 -0.4 5,130,837 - CA265_RS20765 0.85 +0.3 5,130,869 - CA265_RS20765 0.86 +1.5 5,130,869 - CA265_RS20765 0.86 -0.5 5,130,976 - -0.0 5,130,993 + +1.1 5,131,143 + +0.0 5,131,194 + -0.5 5,131,194 + -0.5 5,131,209 - -1.3 5,131,209 - -1.2 5,131,236 - CA265_RS20770 0.14 -0.1 5,131,239 + CA265_RS20770 0.14 +0.4 5,131,258 - CA265_RS20770 0.19 +0.7 5,131,403 + CA265_RS20770 0.52 +0.8 5,131,441 - CA265_RS20770 0.61 -0.1 5,131,467 + CA265_RS20770 0.67 +1.1 5,131,468 - CA265_RS20770 0.67 +0.1 5,131,471 + CA265_RS20770 0.68 -0.2 5,131,658 + CA265_RS20775 0.11 +1.7 5,131,659 - CA265_RS20775 0.11 +0.4 5,131,726 + CA265_RS20775 0.26 +0.2 5,131,726 + CA265_RS20775 0.26 +1.1 5,131,727 - CA265_RS20775 0.26 +0.0 5,131,766 - CA265_RS20775 0.34 -2.7 5,131,887 + CA265_RS20775 0.60 +0.5 5,131,951 + CA265_RS20775 0.73 -0.3 5,131,953 - CA265_RS20775 0.74 +1.1 5,132,020 - CA265_RS20775 0.88 -1.5 5,132,020 - CA265_RS20775 0.88 +0.9 5,132,020 - CA265_RS20775 0.88 -0.2 5,132,020 - CA265_RS20775 0.88 +1.3 5,132,097 + -0.3 5,132,098 - -0.2 5,132,173 - -0.9 5,132,238 - CA265_RS20780 0.18 -2.6 5,132,283 - CA265_RS20780 0.24 -0.5 5,132,283 - CA265_RS20780 0.24 -2.3 5,132,283 - CA265_RS20780 0.24 +0.1 5,132,289 - CA265_RS20780 0.24 +0.3 5,132,404 - CA265_RS20780 0.39 -0.5 5,132,452 + CA265_RS20780 0.45 -0.9 5,132,452 + CA265_RS20780 0.45 -3.0 5,132,464 - CA265_RS20780 0.47 +0.1 5,132,470 + CA265_RS20780 0.48 -1.1 5,132,471 - CA265_RS20780 0.48 +0.9 5,132,493 + CA265_RS20780 0.51 +0.4 5,132,500 + CA265_RS20780 0.52 -1.5 5,132,532 + CA265_RS20780 0.56 +0.1 5,132,533 - CA265_RS20780 0.56 +0.1 5,132,648 + CA265_RS20780 0.71 -1.6 5,132,707 + CA265_RS20780 0.78 +0.5 5,132,707 + CA265_RS20780 0.78 -0.3 5,132,708 - CA265_RS20780 0.78 -0.3 5,132,708 - CA265_RS20780 0.78 -1.4 5,132,728 - CA265_RS20780 0.81 -1.1 5,132,728 - CA265_RS20780 0.81 -1.7 5,132,729 + CA265_RS20780 0.81 -0.4 5,132,729 + CA265_RS20780 0.81 +0.4 5,132,763 + CA265_RS20780 0.85 -2.3 5,132,768 + CA265_RS20780 0.86 +1.9 5,132,809 + +0.9 5,132,922 + CA265_RS20785 0.15 +0.3 5,132,923 - CA265_RS20785 0.15 -0.8 5,132,947 - CA265_RS20785 0.23 -0.6
Or see this region's nucleotide sequence