Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20385 and CA265_RS20390 are separated by 48 nucleotides CA265_RS20390 and CA265_RS20395 overlap by 4 nucleotides CA265_RS20395 and CA265_RS20400 are separated by 94 nucleotides
CA265_RS20385: CA265_RS20385 - hemagglutinin, at 5,041,047 to 5,041,889
_RS20385
CA265_RS20390: CA265_RS20390 - hypothetical protein, at 5,041,938 to 5,042,690
_RS20390
CA265_RS20395: CA265_RS20395 - hypothetical protein, at 5,042,687 to 5,043,010
_RS20395
CA265_RS20400: CA265_RS20400 - hypothetical protein, at 5,043,105 to 5,044,109
_RS20400
Position (kb) 5042
5043
5044 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5041.759 kb on - strand, within CA265_RS20385 at 5041.759 kb on - strand, within CA265_RS20385 at 5041.761 kb on - strand, within CA265_RS20385 at 5041.761 kb on - strand, within CA265_RS20385 at 5041.778 kb on + strand, within CA265_RS20385 at 5041.785 kb on + strand, within CA265_RS20385 at 5041.785 kb on + strand, within CA265_RS20385 at 5041.786 kb on - strand, within CA265_RS20385 at 5041.786 kb on - strand, within CA265_RS20385 at 5041.894 kb on - strand at 5041.959 kb on - strand at 5042.021 kb on + strand, within CA265_RS20390 at 5042.027 kb on + strand, within CA265_RS20390 at 5042.059 kb on - strand, within CA265_RS20390 at 5042.064 kb on + strand, within CA265_RS20390 at 5042.064 kb on + strand, within CA265_RS20390 at 5042.065 kb on - strand, within CA265_RS20390 at 5042.065 kb on - strand, within CA265_RS20390 at 5042.091 kb on + strand, within CA265_RS20390 at 5042.100 kb on - strand, within CA265_RS20390 at 5042.155 kb on + strand, within CA265_RS20390 at 5042.174 kb on + strand, within CA265_RS20390 at 5042.174 kb on + strand, within CA265_RS20390 at 5042.175 kb on - strand, within CA265_RS20390 at 5042.389 kb on - strand, within CA265_RS20390 at 5042.389 kb on - strand, within CA265_RS20390 at 5042.503 kb on + strand, within CA265_RS20390 at 5042.504 kb on - strand, within CA265_RS20390 at 5042.547 kb on + strand, within CA265_RS20390 at 5042.556 kb on - strand, within CA265_RS20390 at 5042.560 kb on - strand, within CA265_RS20390 at 5042.594 kb on + strand, within CA265_RS20390 at 5042.619 kb on - strand at 5042.647 kb on + strand at 5042.681 kb on + strand at 5042.682 kb on - strand at 5042.815 kb on - strand, within CA265_RS20395 at 5042.859 kb on - strand, within CA265_RS20395 at 5042.870 kb on + strand, within CA265_RS20395 at 5042.961 kb on + strand, within CA265_RS20395 at 5042.988 kb on - strand at 5042.998 kb on + strand at 5043.179 kb on + strand at 5043.183 kb on - strand at 5043.307 kb on - strand, within CA265_RS20400 at 5043.336 kb on - strand, within CA265_RS20400 at 5043.336 kb on - strand, within CA265_RS20400 at 5043.359 kb on + strand, within CA265_RS20400 at 5043.442 kb on - strand, within CA265_RS20400 at 5043.443 kb on + strand, within CA265_RS20400 at 5043.443 kb on + strand, within CA265_RS20400 at 5043.443 kb on + strand, within CA265_RS20400 at 5043.443 kb on + strand, within CA265_RS20400 at 5043.444 kb on - strand, within CA265_RS20400 at 5043.447 kb on + strand, within CA265_RS20400 at 5043.447 kb on + strand, within CA265_RS20400 at 5043.448 kb on - strand, within CA265_RS20400 at 5043.477 kb on - strand, within CA265_RS20400 at 5043.682 kb on - strand, within CA265_RS20400 at 5043.682 kb on - strand, within CA265_RS20400 at 5043.708 kb on + strand, within CA265_RS20400 at 5043.719 kb on + strand, within CA265_RS20400 at 5043.784 kb on + strand, within CA265_RS20400 at 5043.786 kb on + strand, within CA265_RS20400 at 5043.872 kb on + strand, within CA265_RS20400 at 5043.930 kb on - strand, within CA265_RS20400 at 5043.939 kb on - strand, within CA265_RS20400
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,041,759 - CA265_RS20385 0.84 +0.4 5,041,759 - CA265_RS20385 0.84 +0.3 5,041,761 - CA265_RS20385 0.85 -0.5 5,041,761 - CA265_RS20385 0.85 -0.9 5,041,778 + CA265_RS20385 0.87 +0.7 5,041,785 + CA265_RS20385 0.88 -0.1 5,041,785 + CA265_RS20385 0.88 -2.0 5,041,786 - CA265_RS20385 0.88 +0.3 5,041,786 - CA265_RS20385 0.88 +2.1 5,041,894 - +0.1 5,041,959 - +0.1 5,042,021 + CA265_RS20390 0.11 -0.9 5,042,027 + CA265_RS20390 0.12 +0.3 5,042,059 - CA265_RS20390 0.16 -0.4 5,042,064 + CA265_RS20390 0.17 +0.0 5,042,064 + CA265_RS20390 0.17 -0.7 5,042,065 - CA265_RS20390 0.17 -0.3 5,042,065 - CA265_RS20390 0.17 +0.2 5,042,091 + CA265_RS20390 0.20 +0.6 5,042,100 - CA265_RS20390 0.22 +0.8 5,042,155 + CA265_RS20390 0.29 -1.2 5,042,174 + CA265_RS20390 0.31 +0.1 5,042,174 + CA265_RS20390 0.31 +1.4 5,042,175 - CA265_RS20390 0.31 +0.4 5,042,389 - CA265_RS20390 0.60 +1.2 5,042,389 - CA265_RS20390 0.60 -0.4 5,042,503 + CA265_RS20390 0.75 -0.2 5,042,504 - CA265_RS20390 0.75 +0.3 5,042,547 + CA265_RS20390 0.81 +1.1 5,042,556 - CA265_RS20390 0.82 +0.1 5,042,560 - CA265_RS20390 0.83 +0.1 5,042,594 + CA265_RS20390 0.87 +0.3 5,042,619 - +0.3 5,042,647 + +0.6 5,042,681 + -0.2 5,042,682 - +0.5 5,042,815 - CA265_RS20395 0.40 -0.1 5,042,859 - CA265_RS20395 0.53 +0.3 5,042,870 + CA265_RS20395 0.56 +1.9 5,042,961 + CA265_RS20395 0.85 -2.1 5,042,988 - +0.7 5,042,998 + +0.0 5,043,179 + -0.1 5,043,183 - -0.2 5,043,307 - CA265_RS20400 0.20 -0.9 5,043,336 - CA265_RS20400 0.23 -0.2 5,043,336 - CA265_RS20400 0.23 +0.5 5,043,359 + CA265_RS20400 0.25 -1.4 5,043,442 - CA265_RS20400 0.34 -0.8 5,043,443 + CA265_RS20400 0.34 -0.1 5,043,443 + CA265_RS20400 0.34 +0.1 5,043,443 + CA265_RS20400 0.34 +0.1 5,043,443 + CA265_RS20400 0.34 +0.2 5,043,444 - CA265_RS20400 0.34 -0.4 5,043,447 + CA265_RS20400 0.34 +0.1 5,043,447 + CA265_RS20400 0.34 +1.4 5,043,448 - CA265_RS20400 0.34 -0.4 5,043,477 - CA265_RS20400 0.37 +0.7 5,043,682 - CA265_RS20400 0.57 -0.4 5,043,682 - CA265_RS20400 0.57 +0.6 5,043,708 + CA265_RS20400 0.60 +0.7 5,043,719 + CA265_RS20400 0.61 +0.3 5,043,784 + CA265_RS20400 0.68 +0.4 5,043,786 + CA265_RS20400 0.68 -0.4 5,043,872 + CA265_RS20400 0.76 -0.1 5,043,930 - CA265_RS20400 0.82 +0.9 5,043,939 - CA265_RS20400 0.83 -0.1
Or see this region's nucleotide sequence