Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17880

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS17875 and CA265_RS17880 are separated by 3 nucleotidesCA265_RS17880 and CA265_RS17885 overlap by 4 nucleotidesCA265_RS17885 and CA265_RS17890 are separated by 429 nucleotides CA265_RS17875: CA265_RS17875 - hypothetical protein, at 4,470,407 to 4,472,560 _RS17875 CA265_RS17880: CA265_RS17880 - hypothetical protein, at 4,472,564 to 4,474,117 _RS17880 CA265_RS17885: CA265_RS17885 - CopY family transcriptional repressor, at 4,474,114 to 4,474,482 _RS17885 CA265_RS17890: CA265_RS17890 - hypothetical protein, at 4,474,912 to 4,475,910 _RS17890 Position (kb) 4472 4473 4474 4475Strain fitness (log2 ratio) -2 -1 0 1 2at 4471.662 kb on + strand, within CA265_RS17875at 4471.663 kb on - strand, within CA265_RS17875at 4471.663 kb on - strand, within CA265_RS17875at 4471.663 kb on - strand, within CA265_RS17875at 4471.663 kb on - strand, within CA265_RS17875at 4471.667 kb on + strand, within CA265_RS17875at 4471.672 kb on + strand, within CA265_RS17875at 4471.716 kb on + strand, within CA265_RS17875at 4471.716 kb on + strand, within CA265_RS17875at 4471.716 kb on + strand, within CA265_RS17875at 4471.716 kb on + strand, within CA265_RS17875at 4471.716 kb on + strand, within CA265_RS17875at 4471.716 kb on + strand, within CA265_RS17875at 4471.717 kb on - strand, within CA265_RS17875at 4471.852 kb on - strand, within CA265_RS17875at 4471.904 kb on + strand, within CA265_RS17875at 4471.921 kb on + strand, within CA265_RS17875at 4471.932 kb on + strand, within CA265_RS17875at 4471.932 kb on + strand, within CA265_RS17875at 4471.932 kb on + strand, within CA265_RS17875at 4471.953 kb on - strand, within CA265_RS17875at 4471.980 kb on - strand, within CA265_RS17875at 4471.984 kb on + strand, within CA265_RS17875at 4471.988 kb on + strand, within CA265_RS17875at 4471.989 kb on - strand, within CA265_RS17875at 4471.990 kb on + strand, within CA265_RS17875at 4471.999 kb on - strand, within CA265_RS17875at 4472.054 kb on + strand, within CA265_RS17875at 4472.084 kb on - strand, within CA265_RS17875at 4472.101 kb on + strand, within CA265_RS17875at 4472.123 kb on + strand, within CA265_RS17875at 4472.152 kb on - strand, within CA265_RS17875at 4472.156 kb on - strand, within CA265_RS17875at 4472.218 kb on + strand, within CA265_RS17875at 4472.233 kb on + strand, within CA265_RS17875at 4472.234 kb on - strand, within CA265_RS17875at 4472.235 kb on + strand, within CA265_RS17875at 4472.236 kb on - strand, within CA265_RS17875at 4472.236 kb on - strand, within CA265_RS17875at 4472.236 kb on - strand, within CA265_RS17875at 4472.290 kb on + strand, within CA265_RS17875at 4472.334 kb on - strand, within CA265_RS17875at 4472.342 kb on + strand, within CA265_RS17875at 4472.342 kb on + strand, within CA265_RS17875at 4472.343 kb on - strand, within CA265_RS17875at 4472.343 kb on - strand, within CA265_RS17875at 4472.345 kb on - strandat 4472.399 kb on + strandat 4472.431 kb on + strandat 4472.535 kb on + strandat 4472.536 kb on - strandat 4472.536 kb on - strandat 4472.556 kb on - strandat 4472.556 kb on - strandat 4472.556 kb on - strandat 4472.638 kb on + strandat 4472.670 kb on - strandat 4472.670 kb on - strandat 4472.672 kb on - strandat 4472.672 kb on - strandat 4472.704 kb on + strandat 4472.705 kb on - strandat 4472.765 kb on - strand, within CA265_RS17880at 4472.765 kb on - strand, within CA265_RS17880at 4472.818 kb on + strand, within CA265_RS17880at 4472.819 kb on - strand, within CA265_RS17880at 4472.851 kb on + strand, within CA265_RS17880at 4472.891 kb on - strand, within CA265_RS17880at 4472.951 kb on - strand, within CA265_RS17880at 4473.113 kb on - strand, within CA265_RS17880at 4473.119 kb on + strand, within CA265_RS17880at 4473.120 kb on - strand, within CA265_RS17880at 4473.151 kb on + strand, within CA265_RS17880at 4473.169 kb on - strand, within CA265_RS17880at 4473.307 kb on - strand, within CA265_RS17880at 4473.343 kb on - strand, within CA265_RS17880at 4473.385 kb on + strand, within CA265_RS17880at 4473.412 kb on + strand, within CA265_RS17880at 4473.439 kb on - strand, within CA265_RS17880at 4473.448 kb on + strand, within CA265_RS17880at 4473.449 kb on - strand, within CA265_RS17880at 4473.460 kb on + strand, within CA265_RS17880at 4473.523 kb on + strand, within CA265_RS17880at 4473.523 kb on + strand, within CA265_RS17880at 4473.523 kb on + strand, within CA265_RS17880at 4473.551 kb on + strand, within CA265_RS17880at 4473.559 kb on + strand, within CA265_RS17880at 4473.594 kb on - strand, within CA265_RS17880at 4473.659 kb on - strand, within CA265_RS17880at 4473.693 kb on + strand, within CA265_RS17880at 4473.697 kb on + strand, within CA265_RS17880at 4473.764 kb on + strand, within CA265_RS17880at 4473.765 kb on - strand, within CA265_RS17880at 4473.806 kb on + strand, within CA265_RS17880at 4473.819 kb on + strand, within CA265_RS17880at 4473.819 kb on + strand, within CA265_RS17880at 4473.820 kb on - strand, within CA265_RS17880at 4473.887 kb on + strand, within CA265_RS17880at 4473.907 kb on - strand, within CA265_RS17880at 4473.911 kb on + strand, within CA265_RS17880at 4473.945 kb on - strand, within CA265_RS17880at 4474.012 kb on - strandat 4474.012 kb on - strandat 4474.012 kb on - strandat 4474.042 kb on + strandat 4474.081 kb on + strandat 4474.081 kb on + strandat 4474.098 kb on - strandat 4474.100 kb on + strandat 4474.110 kb on - strandat 4474.159 kb on - strand, within CA265_RS17885at 4474.191 kb on + strand, within CA265_RS17885at 4474.316 kb on + strand, within CA265_RS17885at 4474.320 kb on + strand, within CA265_RS17885at 4474.339 kb on + strand, within CA265_RS17885at 4474.368 kb on + strand, within CA265_RS17885at 4474.408 kb on - strand, within CA265_RS17885at 4474.450 kb on - strandat 4474.452 kb on + strandat 4474.452 kb on + strandat 4474.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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4,471,662 + CA265_RS17875 0.58 -0.6
4,471,663 - CA265_RS17875 0.58 +0.3
4,471,663 - CA265_RS17875 0.58 -0.9
4,471,663 - CA265_RS17875 0.58 -1.2
4,471,663 - CA265_RS17875 0.58 +0.3
4,471,667 + CA265_RS17875 0.58 -0.4
4,471,672 + CA265_RS17875 0.59 -0.4
4,471,716 + CA265_RS17875 0.61 -0.4
4,471,716 + CA265_RS17875 0.61 +0.3
4,471,716 + CA265_RS17875 0.61 +0.9
4,471,716 + CA265_RS17875 0.61 -0.1
4,471,716 + CA265_RS17875 0.61 +0.3
4,471,716 + CA265_RS17875 0.61 -0.9
4,471,717 - CA265_RS17875 0.61 -0.9
4,471,852 - CA265_RS17875 0.67 +0.0
4,471,904 + CA265_RS17875 0.69 +0.7
4,471,921 + CA265_RS17875 0.70 -0.9
4,471,932 + CA265_RS17875 0.71 -0.6
4,471,932 + CA265_RS17875 0.71 +0.2
4,471,932 + CA265_RS17875 0.71 -0.1
4,471,953 - CA265_RS17875 0.72 -0.0
4,471,980 - CA265_RS17875 0.73 -0.4
4,471,984 + CA265_RS17875 0.73 +1.7
4,471,988 + CA265_RS17875 0.73 -0.4
4,471,989 - CA265_RS17875 0.73 +0.2
4,471,990 + CA265_RS17875 0.73 +0.4
4,471,999 - CA265_RS17875 0.74 -1.7
4,472,054 + CA265_RS17875 0.76 -0.8
4,472,084 - CA265_RS17875 0.78 +0.4
4,472,101 + CA265_RS17875 0.79 +0.8
4,472,123 + CA265_RS17875 0.80 +0.1
4,472,152 - CA265_RS17875 0.81 -0.3
4,472,156 - CA265_RS17875 0.81 +0.3
4,472,218 + CA265_RS17875 0.84 -0.9
4,472,233 + CA265_RS17875 0.85 +0.2
4,472,234 - CA265_RS17875 0.85 +0.5
4,472,235 + CA265_RS17875 0.85 +0.5
4,472,236 - CA265_RS17875 0.85 +0.3
4,472,236 - CA265_RS17875 0.85 +2.1
4,472,236 - CA265_RS17875 0.85 +0.2
4,472,290 + CA265_RS17875 0.87 +0.2
4,472,334 - CA265_RS17875 0.89 -2.6
4,472,342 + CA265_RS17875 0.90 -0.2
4,472,342 + CA265_RS17875 0.90 +0.2
4,472,343 - CA265_RS17875 0.90 +0.3
4,472,343 - CA265_RS17875 0.90 +1.3
4,472,345 - -2.0
4,472,399 + +0.1
4,472,431 + +0.3
4,472,535 + +0.7
4,472,536 - -0.3
4,472,536 - -1.3
4,472,556 - +0.7
4,472,556 - -0.7
4,472,556 - -0.7
4,472,638 + +0.1
4,472,670 - +0.2
4,472,670 - +1.2
4,472,672 - +0.1
4,472,672 - -0.1
4,472,704 + -0.8
4,472,705 - +0.5
4,472,765 - CA265_RS17880 0.13 +0.8
4,472,765 - CA265_RS17880 0.13 +1.1
4,472,818 + CA265_RS17880 0.16 +0.7
4,472,819 - CA265_RS17880 0.16 +0.9
4,472,851 + CA265_RS17880 0.18 +0.1
4,472,891 - CA265_RS17880 0.21 -1.6
4,472,951 - CA265_RS17880 0.25 +0.5
4,473,113 - CA265_RS17880 0.35 -0.3
4,473,119 + CA265_RS17880 0.36 -1.0
4,473,120 - CA265_RS17880 0.36 +0.9
4,473,151 + CA265_RS17880 0.38 +0.1
4,473,169 - CA265_RS17880 0.39 -0.2
4,473,307 - CA265_RS17880 0.48 +0.6
4,473,343 - CA265_RS17880 0.50 +0.9
4,473,385 + CA265_RS17880 0.53 +0.8
4,473,412 + CA265_RS17880 0.55 -0.4
4,473,439 - CA265_RS17880 0.56 +0.4
4,473,448 + CA265_RS17880 0.57 -0.1
4,473,449 - CA265_RS17880 0.57 -0.3
4,473,460 + CA265_RS17880 0.58 -0.1
4,473,523 + CA265_RS17880 0.62 +0.3
4,473,523 + CA265_RS17880 0.62 +0.3
4,473,523 + CA265_RS17880 0.62 +0.7
4,473,551 + CA265_RS17880 0.64 +0.2
4,473,559 + CA265_RS17880 0.64 +0.5
4,473,594 - CA265_RS17880 0.66 -0.4
4,473,659 - CA265_RS17880 0.70 +0.4
4,473,693 + CA265_RS17880 0.73 +0.7
4,473,697 + CA265_RS17880 0.73 +0.6
4,473,764 + CA265_RS17880 0.77 +0.4
4,473,765 - CA265_RS17880 0.77 +0.0
4,473,806 + CA265_RS17880 0.80 -0.9
4,473,819 + CA265_RS17880 0.81 +0.5
4,473,819 + CA265_RS17880 0.81 +0.6
4,473,820 - CA265_RS17880 0.81 +0.2
4,473,887 + CA265_RS17880 0.85 -0.1
4,473,907 - CA265_RS17880 0.86 +0.3
4,473,911 + CA265_RS17880 0.87 +0.8
4,473,945 - CA265_RS17880 0.89 -0.4
4,474,012 - -1.5
4,474,012 - -0.1
4,474,012 - -0.7
4,474,042 + +0.1
4,474,081 + -0.3
4,474,081 + +0.9
4,474,098 - +0.3
4,474,100 + -1.3
4,474,110 - +1.0
4,474,159 - CA265_RS17885 0.12 +0.5
4,474,191 + CA265_RS17885 0.21 +1.7
4,474,316 + CA265_RS17885 0.55 +0.5
4,474,320 + CA265_RS17885 0.56 -2.3
4,474,339 + CA265_RS17885 0.61 -0.3
4,474,368 + CA265_RS17885 0.69 -0.1
4,474,408 - CA265_RS17885 0.80 -0.6
4,474,450 - -0.0
4,474,452 + +0.1
4,474,452 + +0.3
4,474,472 - +0.5

Or see this region's nucleotide sequence