Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14650

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS14635 and CA265_RS14640 are separated by 109 nucleotidesCA265_RS14640 and CA265_RS14645 are separated by 248 nucleotidesCA265_RS14645 and CA265_RS14650 overlap by 4 nucleotidesCA265_RS14650 and CA265_RS14655 are separated by 514 nucleotides CA265_RS14635: CA265_RS14635 - aldehyde dehydrogenase, at 3,683,351 to 3,684,856 _RS14635 CA265_RS14640: CA265_RS14640 - UDP-glucose 4-epimerase, at 3,684,966 to 3,685,340 _RS14640 CA265_RS14645: CA265_RS14645 - hypothetical protein, at 3,685,589 to 3,685,795 _RS14645 CA265_RS14650: CA265_RS14650 - thiol-disulfide oxidoreductase, at 3,685,792 to 3,686,193 _RS14650 CA265_RS14655: CA265_RS14655 - bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase, at 3,686,708 to 3,687,262 _RS14655 Position (kb) 3685 3686 3687Strain fitness (log2 ratio) -1 0 1 2at 3684.979 kb on + strandat 3685.073 kb on + strand, within CA265_RS14640at 3685.104 kb on + strand, within CA265_RS14640at 3685.202 kb on + strand, within CA265_RS14640at 3685.207 kb on + strand, within CA265_RS14640at 3685.272 kb on - strand, within CA265_RS14640at 3685.306 kb on + strandat 3685.307 kb on - strandat 3685.307 kb on - strandat 3685.307 kb on - strandat 3685.342 kb on + strandat 3685.348 kb on + strandat 3685.349 kb on - strandat 3685.349 kb on - strandat 3685.399 kb on + strandat 3685.434 kb on - strandat 3685.434 kb on - strandat 3685.471 kb on - strandat 3685.493 kb on + strandat 3685.625 kb on - strand, within CA265_RS14645at 3685.716 kb on + strand, within CA265_RS14645at 3685.721 kb on - strand, within CA265_RS14645at 3685.743 kb on + strand, within CA265_RS14645at 3685.887 kb on - strand, within CA265_RS14650at 3685.928 kb on + strand, within CA265_RS14650at 3685.929 kb on - strand, within CA265_RS14650at 3685.970 kb on - strand, within CA265_RS14650at 3686.026 kb on + strand, within CA265_RS14650at 3686.026 kb on + strand, within CA265_RS14650at 3686.027 kb on - strand, within CA265_RS14650at 3686.027 kb on - strand, within CA265_RS14650at 3686.193 kb on + strandat 3686.194 kb on - strandat 3686.206 kb on + strandat 3686.224 kb on + strandat 3686.224 kb on + strandat 3686.228 kb on + strandat 3686.244 kb on - strandat 3686.247 kb on - strandat 3686.261 kb on + strandat 3686.330 kb on - strandat 3686.352 kb on - strandat 3686.395 kb on + strandat 3686.685 kb on + strandat 3686.687 kb on + strandat 3686.687 kb on + strandat 3686.749 kb on + strandat 3686.755 kb on + strandat 3686.755 kb on + strandat 3686.911 kb on + strand, within CA265_RS14655at 3686.914 kb on + strand, within CA265_RS14655at 3687.021 kb on + strand, within CA265_RS14655at 3687.174 kb on + strand, within CA265_RS14655at 3687.189 kb on + strand, within CA265_RS14655

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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3,684,979 + -1.2
3,685,073 + CA265_RS14640 0.29 -0.1
3,685,104 + CA265_RS14640 0.37 -0.6
3,685,202 + CA265_RS14640 0.63 +0.4
3,685,207 + CA265_RS14640 0.64 +1.9
3,685,272 - CA265_RS14640 0.82 -0.0
3,685,306 + +1.0
3,685,307 - +0.1
3,685,307 - +0.7
3,685,307 - +0.2
3,685,342 + -1.2
3,685,348 + -1.2
3,685,349 - +1.9
3,685,349 - +0.1
3,685,399 + -0.6
3,685,434 - -1.1
3,685,434 - -0.2
3,685,471 - +0.3
3,685,493 + +0.4
3,685,625 - CA265_RS14645 0.17 -0.4
3,685,716 + CA265_RS14645 0.61 +0.5
3,685,721 - CA265_RS14645 0.64 -1.0
3,685,743 + CA265_RS14645 0.74 -0.3
3,685,887 - CA265_RS14650 0.24 +0.7
3,685,928 + CA265_RS14650 0.34 +0.7
3,685,929 - CA265_RS14650 0.34 -0.7
3,685,970 - CA265_RS14650 0.44 +0.5
3,686,026 + CA265_RS14650 0.58 +1.0
3,686,026 + CA265_RS14650 0.58 -0.0
3,686,027 - CA265_RS14650 0.58 +1.0
3,686,027 - CA265_RS14650 0.58 +0.1
3,686,193 + +0.0
3,686,194 - -0.5
3,686,206 + +0.5
3,686,224 + -0.4
3,686,224 + -0.6
3,686,228 + -1.4
3,686,244 - -0.8
3,686,247 - -0.3
3,686,261 + -0.9
3,686,330 - +0.7
3,686,352 - -0.1
3,686,395 + +0.3
3,686,685 + +0.2
3,686,687 + -0.2
3,686,687 + -0.5
3,686,749 + -0.1
3,686,755 + -0.4
3,686,755 + -0.2
3,686,911 + CA265_RS14655 0.37 +0.1
3,686,914 + CA265_RS14655 0.37 +0.4
3,687,021 + CA265_RS14655 0.56 +0.6
3,687,174 + CA265_RS14655 0.84 -0.3
3,687,189 + CA265_RS14655 0.87 +0.3

Or see this region's nucleotide sequence