Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03835

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03825 and CA265_RS03830 are separated by 41 nucleotidesCA265_RS03830 and CA265_RS03835 are separated by 41 nucleotidesCA265_RS03835 and CA265_RS03840 are separated by 197 nucleotidesCA265_RS03840 and CA265_RS03845 are separated by 237 nucleotides CA265_RS03825: CA265_RS03825 - hypothetical protein, at 902,982 to 903,257 _RS03825 CA265_RS03830: CA265_RS03830 - DUF4833 domain-containing protein, at 903,299 to 903,877 _RS03830 CA265_RS03835: CA265_RS03835 - hypothetical protein, at 903,919 to 904,101 _RS03835 CA265_RS03840: CA265_RS03840 - tRNA-Cys, at 904,299 to 904,372 _RS03840 CA265_RS03845: CA265_RS03845 - TldD protein, at 904,610 to 906,250 _RS03845 Position (kb) 903 904 905Strain fitness (log2 ratio) -2 -1 0 1at 902.921 kb on - strandat 902.927 kb on - strandat 902.975 kb on + strandat 902.990 kb on + strandat 903.037 kb on + strand, within CA265_RS03825at 903.038 kb on - strand, within CA265_RS03825at 903.125 kb on - strand, within CA265_RS03825at 903.150 kb on + strand, within CA265_RS03825at 903.150 kb on + strand, within CA265_RS03825at 903.156 kb on - strand, within CA265_RS03825at 903.168 kb on - strand, within CA265_RS03825at 903.187 kb on + strand, within CA265_RS03825at 903.212 kb on + strand, within CA265_RS03825at 903.255 kb on + strandat 903.325 kb on + strandat 903.371 kb on + strand, within CA265_RS03830at 903.422 kb on - strand, within CA265_RS03830at 903.422 kb on - strand, within CA265_RS03830at 903.476 kb on - strand, within CA265_RS03830at 903.478 kb on - strand, within CA265_RS03830at 903.529 kb on - strand, within CA265_RS03830at 903.584 kb on - strand, within CA265_RS03830at 903.680 kb on + strand, within CA265_RS03830at 903.687 kb on + strand, within CA265_RS03830at 903.698 kb on - strand, within CA265_RS03830at 903.698 kb on - strand, within CA265_RS03830at 903.728 kb on + strand, within CA265_RS03830at 903.729 kb on - strand, within CA265_RS03830at 903.733 kb on + strand, within CA265_RS03830at 903.734 kb on - strand, within CA265_RS03830at 903.734 kb on - strand, within CA265_RS03830at 903.880 kb on + strandat 903.931 kb on - strandat 903.986 kb on + strand, within CA265_RS03835at 903.987 kb on - strand, within CA265_RS03835at 904.094 kb on - strandat 904.101 kb on + strandat 904.101 kb on + strandat 904.102 kb on - strandat 904.119 kb on - strandat 904.210 kb on + strandat 904.210 kb on + strandat 904.236 kb on + strandat 904.237 kb on - strandat 904.273 kb on + strandat 904.290 kb on + strandat 904.290 kb on + strandat 904.375 kb on - strandat 904.375 kb on - strandat 904.385 kb on + strandat 904.385 kb on + strandat 904.386 kb on - strandat 904.386 kb on - strandat 904.386 kb on - strandat 904.388 kb on - strandat 904.498 kb on + strandat 904.498 kb on + strandat 904.507 kb on + strandat 904.565 kb on + strandat 904.565 kb on + strandat 904.566 kb on - strandat 904.634 kb on - strandat 904.637 kb on + strandat 904.637 kb on + strandat 904.837 kb on + strand, within CA265_RS03845at 904.838 kb on - strand, within CA265_RS03845at 904.874 kb on - strand, within CA265_RS03845at 904.875 kb on + strand, within CA265_RS03845at 904.918 kb on - strand, within CA265_RS03845at 904.918 kb on - strandat 904.959 kb on - strand, within CA265_RS03845at 904.959 kb on - strand, within CA265_RS03845

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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902,921 - -0.5
902,927 - -0.2
902,975 + -1.2
902,990 + -0.0
903,037 + CA265_RS03825 0.20 -0.8
903,038 - CA265_RS03825 0.20 -0.8
903,125 - CA265_RS03825 0.52 -0.4
903,150 + CA265_RS03825 0.61 -0.2
903,150 + CA265_RS03825 0.61 +0.3
903,156 - CA265_RS03825 0.63 +0.1
903,168 - CA265_RS03825 0.67 -0.8
903,187 + CA265_RS03825 0.74 -0.4
903,212 + CA265_RS03825 0.83 -0.6
903,255 + -0.2
903,325 + -1.4
903,371 + CA265_RS03830 0.12 -0.3
903,422 - CA265_RS03830 0.21 +0.2
903,422 - CA265_RS03830 0.21 +0.5
903,476 - CA265_RS03830 0.31 +0.4
903,478 - CA265_RS03830 0.31 -0.9
903,529 - CA265_RS03830 0.40 +0.8
903,584 - CA265_RS03830 0.49 +0.3
903,680 + CA265_RS03830 0.66 +0.3
903,687 + CA265_RS03830 0.67 -0.9
903,698 - CA265_RS03830 0.69 -1.2
903,698 - CA265_RS03830 0.69 -0.2
903,728 + CA265_RS03830 0.74 -0.6
903,729 - CA265_RS03830 0.74 -0.8
903,733 + CA265_RS03830 0.75 -0.5
903,734 - CA265_RS03830 0.75 -0.2
903,734 - CA265_RS03830 0.75 +0.1
903,880 + -1.1
903,931 - +0.2
903,986 + CA265_RS03835 0.37 +0.9
903,987 - CA265_RS03835 0.37 -0.1
904,094 - +0.5
904,101 + +1.1
904,101 + +0.5
904,102 - -0.2
904,119 - -0.4
904,210 + -0.2
904,210 + -0.3
904,236 + -0.1
904,237 - -0.5
904,273 + -0.7
904,290 + -0.9
904,290 + +1.5
904,375 - -0.8
904,375 - -0.8
904,385 + +0.1
904,385 + -0.6
904,386 - +0.3
904,386 - -0.3
904,386 - -2.7
904,388 - +0.3
904,498 + -0.0
904,498 + +1.5
904,507 + +0.5
904,565 + -1.4
904,565 + -1.9
904,566 - -0.4
904,634 - -0.6
904,637 + +0.7
904,637 + -0.3
904,837 + CA265_RS03845 0.14 -0.5
904,838 - CA265_RS03845 0.14 -0.5
904,874 - CA265_RS03845 0.16 -0.1
904,875 + CA265_RS03845 0.16 -0.9
904,918 - CA265_RS03845 0.19 -0.4
904,918 - +0.5
904,959 - CA265_RS03845 0.21 +0.1
904,959 - CA265_RS03845 0.21 +1.3

Or see this region's nucleotide sequence