Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03755 and CA265_RS03760 are separated by 82 nucleotides CA265_RS03760 and CA265_RS03765 are separated by 188 nucleotides CA265_RS03765 and CA265_RS03770 are separated by 48 nucleotides
CA265_RS03755: CA265_RS03755 - RIP metalloprotease RseP, at 891,621 to 893,009
_RS03755
CA265_RS03760: CA265_RS03760 - Fe-S protein assembly co-chaperone HscB, at 893,092 to 893,628
_RS03760
CA265_RS03765: CA265_RS03765 - hypothetical protein, at 893,817 to 894,113
_RS03765
CA265_RS03770: CA265_RS03770 - hypothetical protein, at 894,162 to 895,331
_RS03770
Position (kb) 893
894
895 Strain fitness (log2 ratio) -1
0
1 at 893.007 kb on + strand at 893.019 kb on + strand at 893.086 kb on + strand at 893.632 kb on + strand at 893.633 kb on - strand at 893.682 kb on - strand at 893.697 kb on + strand at 893.704 kb on + strand at 893.734 kb on + strand at 893.823 kb on - strand at 893.835 kb on - strand at 893.872 kb on - strand, within CA265_RS03765 at 893.890 kb on + strand, within CA265_RS03765 at 893.891 kb on - strand, within CA265_RS03765 at 893.928 kb on + strand, within CA265_RS03765 at 893.932 kb on + strand, within CA265_RS03765 at 893.933 kb on - strand, within CA265_RS03765 at 893.962 kb on + strand, within CA265_RS03765 at 893.968 kb on + strand, within CA265_RS03765 at 893.968 kb on + strand, within CA265_RS03765 at 894.072 kb on - strand, within CA265_RS03765 at 894.132 kb on - strand at 894.147 kb on - strand at 894.148 kb on + strand at 894.148 kb on + strand at 894.148 kb on + strand at 894.148 kb on + strand at 894.149 kb on - strand at 894.149 kb on - strand at 894.149 kb on - strand at 894.186 kb on - strand at 894.225 kb on - strand at 894.225 kb on - strand at 894.227 kb on - strand at 894.299 kb on + strand, within CA265_RS03770 at 894.316 kb on + strand, within CA265_RS03770 at 894.319 kb on + strand, within CA265_RS03770 at 894.352 kb on + strand, within CA265_RS03770 at 894.353 kb on - strand, within CA265_RS03770 at 894.369 kb on - strand, within CA265_RS03770 at 894.424 kb on + strand, within CA265_RS03770 at 894.429 kb on - strand, within CA265_RS03770 at 894.429 kb on - strand, within CA265_RS03770 at 894.451 kb on + strand, within CA265_RS03770 at 894.503 kb on - strand, within CA265_RS03770 at 894.567 kb on - strand, within CA265_RS03770 at 894.577 kb on + strand, within CA265_RS03770 at 894.580 kb on + strand, within CA265_RS03770 at 894.620 kb on + strand, within CA265_RS03770 at 894.637 kb on + strand, within CA265_RS03770 at 894.638 kb on - strand, within CA265_RS03770 at 894.640 kb on + strand, within CA265_RS03770 at 894.662 kb on + strand, within CA265_RS03770 at 894.727 kb on + strand, within CA265_RS03770 at 894.737 kb on - strand, within CA265_RS03770 at 894.772 kb on - strand, within CA265_RS03770 at 894.826 kb on + strand, within CA265_RS03770 at 894.830 kb on + strand, within CA265_RS03770 at 894.936 kb on + strand, within CA265_RS03770 at 894.949 kb on - strand, within CA265_RS03770 at 894.984 kb on - strand, within CA265_RS03770 at 895.002 kb on - strand, within CA265_RS03770 at 895.046 kb on - strand, within CA265_RS03770 at 895.085 kb on + strand, within CA265_RS03770 at 895.085 kb on + strand, within CA265_RS03770 at 895.086 kb on - strand, within CA265_RS03770 at 895.086 kb on - strand, within CA265_RS03770
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 893,007 + -0.3 893,019 + -0.4 893,086 + +0.1 893,632 + +0.5 893,633 - +0.0 893,682 - +1.5 893,697 + +0.2 893,704 + -0.5 893,734 + +0.3 893,823 - +1.3 893,835 - +0.1 893,872 - CA265_RS03765 0.19 -1.0 893,890 + CA265_RS03765 0.25 -0.7 893,891 - CA265_RS03765 0.25 -0.1 893,928 + CA265_RS03765 0.37 -0.1 893,932 + CA265_RS03765 0.39 +0.8 893,933 - CA265_RS03765 0.39 +0.7 893,962 + CA265_RS03765 0.49 -0.5 893,968 + CA265_RS03765 0.51 +1.3 893,968 + CA265_RS03765 0.51 +0.2 894,072 - CA265_RS03765 0.86 +0.3 894,132 - +0.5 894,147 - +0.5 894,148 + +0.2 894,148 + -0.1 894,148 + +0.3 894,148 + -0.9 894,149 - +0.3 894,149 - -0.3 894,149 - -0.1 894,186 - -0.2 894,225 - +0.6 894,225 - +0.7 894,227 - -0.4 894,299 + CA265_RS03770 0.12 -0.3 894,316 + CA265_RS03770 0.13 -1.2 894,319 + CA265_RS03770 0.13 +0.5 894,352 + CA265_RS03770 0.16 +0.9 894,353 - CA265_RS03770 0.16 +0.3 894,369 - CA265_RS03770 0.18 -1.3 894,424 + CA265_RS03770 0.22 +0.4 894,429 - CA265_RS03770 0.23 +0.6 894,429 - CA265_RS03770 0.23 +0.2 894,451 + CA265_RS03770 0.25 +0.3 894,503 - CA265_RS03770 0.29 +0.4 894,567 - CA265_RS03770 0.35 -0.0 894,577 + CA265_RS03770 0.35 +0.3 894,580 + CA265_RS03770 0.36 -0.7 894,620 + CA265_RS03770 0.39 +0.7 894,637 + CA265_RS03770 0.41 -0.1 894,638 - CA265_RS03770 0.41 +1.0 894,640 + CA265_RS03770 0.41 +0.2 894,662 + CA265_RS03770 0.43 +0.1 894,727 + CA265_RS03770 0.48 +0.5 894,737 - CA265_RS03770 0.49 -0.6 894,772 - CA265_RS03770 0.52 -0.3 894,826 + CA265_RS03770 0.57 -1.4 894,830 + CA265_RS03770 0.57 -0.4 894,936 + CA265_RS03770 0.66 -1.4 894,949 - CA265_RS03770 0.67 -1.4 894,984 - CA265_RS03770 0.70 -0.0 895,002 - CA265_RS03770 0.72 +0.7 895,046 - CA265_RS03770 0.76 -1.1 895,085 + CA265_RS03770 0.79 +0.2 895,085 + CA265_RS03770 0.79 -0.3 895,086 - CA265_RS03770 0.79 -0.1 895,086 - CA265_RS03770 0.79 +0.6
Or see this region's nucleotide sequence