Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03700

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03690 and CA265_RS03695 are separated by 58 nucleotidesCA265_RS03695 and CA265_RS03700 are separated by 40 nucleotidesCA265_RS03700 and CA265_RS03705 are separated by 207 nucleotides CA265_RS03690: CA265_RS03690 - nicotinate phosphoribosyltransferase, at 877,986 to 879,443 _RS03690 CA265_RS03695: CA265_RS03695 - hypothetical protein, at 879,502 to 879,906 _RS03695 CA265_RS03700: CA265_RS03700 - hypothetical protein, at 879,947 to 880,477 _RS03700 CA265_RS03705: CA265_RS03705 - hypothetical protein, at 880,685 to 882,724 _RS03705 Position (kb) 879 880 881Strain fitness (log2 ratio) -2 -1 0 1 2at 878.966 kb on - strand, within CA265_RS03690at 878.966 kb on - strand, within CA265_RS03690at 878.987 kb on - strand, within CA265_RS03690at 879.002 kb on + strand, within CA265_RS03690at 879.003 kb on - strand, within CA265_RS03690at 879.056 kb on + strand, within CA265_RS03690at 879.057 kb on - strand, within CA265_RS03690at 879.060 kb on - strand, within CA265_RS03690at 879.060 kb on - strand, within CA265_RS03690at 879.119 kb on + strand, within CA265_RS03690at 879.120 kb on - strand, within CA265_RS03690at 879.150 kb on - strand, within CA265_RS03690at 879.164 kb on + strand, within CA265_RS03690at 879.201 kb on + strand, within CA265_RS03690at 879.201 kb on + strand, within CA265_RS03690at 879.202 kb on - strand, within CA265_RS03690at 879.202 kb on - strand, within CA265_RS03690at 879.202 kb on - strand, within CA265_RS03690at 879.211 kb on + strand, within CA265_RS03690at 879.315 kb on + strandat 879.391 kb on + strandat 879.391 kb on + strandat 879.403 kb on - strandat 879.485 kb on + strandat 879.498 kb on + strandat 879.543 kb on - strand, within CA265_RS03695at 879.562 kb on - strand, within CA265_RS03695at 879.563 kb on + strand, within CA265_RS03695at 879.585 kb on + strand, within CA265_RS03695at 879.586 kb on - strand, within CA265_RS03695at 879.586 kb on - strand, within CA265_RS03695at 879.618 kb on + strand, within CA265_RS03695at 879.697 kb on + strand, within CA265_RS03695at 879.697 kb on + strand, within CA265_RS03695at 879.697 kb on + strand, within CA265_RS03695at 879.698 kb on - strand, within CA265_RS03695at 879.720 kb on + strand, within CA265_RS03695at 879.835 kb on - strand, within CA265_RS03695at 879.855 kb on + strand, within CA265_RS03695at 879.855 kb on + strand, within CA265_RS03695at 879.856 kb on - strand, within CA265_RS03695at 879.978 kb on + strandat 879.994 kb on + strandat 880.034 kb on + strand, within CA265_RS03700at 880.035 kb on - strand, within CA265_RS03700at 880.036 kb on + strand, within CA265_RS03700at 880.036 kb on + strand, within CA265_RS03700at 880.038 kb on + strand, within CA265_RS03700at 880.039 kb on - strand, within CA265_RS03700at 880.039 kb on - strand, within CA265_RS03700at 880.039 kb on - strand, within CA265_RS03700at 880.093 kb on + strand, within CA265_RS03700at 880.127 kb on + strand, within CA265_RS03700at 880.142 kb on - strand, within CA265_RS03700at 880.183 kb on + strand, within CA265_RS03700at 880.188 kb on + strand, within CA265_RS03700at 880.188 kb on + strand, within CA265_RS03700at 880.195 kb on + strand, within CA265_RS03700at 880.196 kb on - strand, within CA265_RS03700at 880.196 kb on - strand, within CA265_RS03700at 880.196 kb on - strand, within CA265_RS03700at 880.206 kb on - strand, within CA265_RS03700at 880.208 kb on - strand, within CA265_RS03700at 880.227 kb on + strand, within CA265_RS03700at 880.228 kb on - strand, within CA265_RS03700at 880.298 kb on + strand, within CA265_RS03700at 880.418 kb on + strand, within CA265_RS03700at 880.419 kb on - strand, within CA265_RS03700at 880.441 kb on - strandat 880.598 kb on + strandat 880.612 kb on - strandat 880.618 kb on + strandat 880.633 kb on + strandat 880.723 kb on - strandat 880.753 kb on - strandat 880.781 kb on + strandat 880.914 kb on - strand, within CA265_RS03705at 880.955 kb on - strand, within CA265_RS03705at 880.956 kb on + strand, within CA265_RS03705at 880.968 kb on - strand, within CA265_RS03705at 880.983 kb on - strand, within CA265_RS03705at 880.988 kb on - strand, within CA265_RS03705at 881.086 kb on - strand, within CA265_RS03705at 881.088 kb on + strand, within CA265_RS03705at 881.088 kb on + strand, within CA265_RS03705at 881.216 kb on - strand, within CA265_RS03705at 881.237 kb on - strand, within CA265_RS03705at 881.240 kb on + strand, within CA265_RS03705at 881.240 kb on + strand, within CA265_RS03705at 881.241 kb on - strand, within CA265_RS03705at 881.288 kb on - strand, within CA265_RS03705at 881.353 kb on + strand, within CA265_RS03705at 881.354 kb on - strand, within CA265_RS03705at 881.361 kb on + strand, within CA265_RS03705at 881.362 kb on - strand, within CA265_RS03705at 881.416 kb on - strand, within CA265_RS03705at 881.421 kb on + strand, within CA265_RS03705at 881.476 kb on + strand, within CA265_RS03705

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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878,966 - CA265_RS03690 0.67 +1.3
878,966 - CA265_RS03690 0.67 +0.3
878,987 - CA265_RS03690 0.69 -0.9
879,002 + CA265_RS03690 0.70 +0.3
879,003 - CA265_RS03690 0.70 -1.0
879,056 + CA265_RS03690 0.73 -1.5
879,057 - CA265_RS03690 0.73 +0.3
879,060 - CA265_RS03690 0.74 +0.0
879,060 - CA265_RS03690 0.74 -0.2
879,119 + CA265_RS03690 0.78 +0.2
879,120 - CA265_RS03690 0.78 -1.4
879,150 - CA265_RS03690 0.80 +0.6
879,164 + CA265_RS03690 0.81 +0.5
879,201 + CA265_RS03690 0.83 +0.3
879,201 + CA265_RS03690 0.83 +0.5
879,202 - CA265_RS03690 0.83 +0.4
879,202 - CA265_RS03690 0.83 -0.1
879,202 - CA265_RS03690 0.83 +0.2
879,211 + CA265_RS03690 0.84 -1.1
879,315 + +1.5
879,391 + -0.5
879,391 + +1.7
879,403 - -0.4
879,485 + -0.3
879,498 + -0.3
879,543 - CA265_RS03695 0.10 +0.1
879,562 - CA265_RS03695 0.15 +0.1
879,563 + CA265_RS03695 0.15 +0.1
879,585 + CA265_RS03695 0.20 -0.9
879,586 - CA265_RS03695 0.21 -0.3
879,586 - CA265_RS03695 0.21 +0.4
879,618 + CA265_RS03695 0.29 +1.0
879,697 + CA265_RS03695 0.48 +1.4
879,697 + CA265_RS03695 0.48 +0.3
879,697 + CA265_RS03695 0.48 +0.4
879,698 - CA265_RS03695 0.48 +0.4
879,720 + CA265_RS03695 0.54 +2.1
879,835 - CA265_RS03695 0.82 +0.3
879,855 + CA265_RS03695 0.87 +0.3
879,855 + CA265_RS03695 0.87 +0.0
879,856 - CA265_RS03695 0.87 +0.7
879,978 + +0.2
879,994 + -1.1
880,034 + CA265_RS03700 0.16 -0.3
880,035 - CA265_RS03700 0.17 +0.0
880,036 + CA265_RS03700 0.17 +0.3
880,036 + CA265_RS03700 0.17 -0.2
880,038 + CA265_RS03700 0.17 -0.3
880,039 - CA265_RS03700 0.17 -0.3
880,039 - CA265_RS03700 0.17 +0.4
880,039 - CA265_RS03700 0.17 +0.2
880,093 + CA265_RS03700 0.27 +0.0
880,127 + CA265_RS03700 0.34 +0.2
880,142 - CA265_RS03700 0.37 +1.0
880,183 + CA265_RS03700 0.44 -0.0
880,188 + CA265_RS03700 0.45 -0.1
880,188 + CA265_RS03700 0.45 -0.4
880,195 + CA265_RS03700 0.47 +1.9
880,196 - CA265_RS03700 0.47 +1.0
880,196 - CA265_RS03700 0.47 -0.0
880,196 - CA265_RS03700 0.47 +0.1
880,206 - CA265_RS03700 0.49 -0.1
880,208 - CA265_RS03700 0.49 +0.3
880,227 + CA265_RS03700 0.53 +0.1
880,228 - CA265_RS03700 0.53 +0.1
880,298 + CA265_RS03700 0.66 -0.7
880,418 + CA265_RS03700 0.89 +0.8
880,419 - CA265_RS03700 0.89 +0.0
880,441 - +0.1
880,598 + -0.9
880,612 - -1.3
880,618 + -0.1
880,633 + +0.9
880,723 - +0.2
880,753 - +0.2
880,781 + +0.5
880,914 - CA265_RS03705 0.11 +0.7
880,955 - CA265_RS03705 0.13 +0.5
880,956 + CA265_RS03705 0.13 -2.4
880,968 - CA265_RS03705 0.14 +0.2
880,983 - CA265_RS03705 0.15 -0.1
880,988 - CA265_RS03705 0.15 +0.2
881,086 - CA265_RS03705 0.20 +0.6
881,088 + CA265_RS03705 0.20 +0.9
881,088 + CA265_RS03705 0.20 -0.1
881,216 - CA265_RS03705 0.26 +0.6
881,237 - CA265_RS03705 0.27 -1.0
881,240 + CA265_RS03705 0.27 +0.4
881,240 + CA265_RS03705 0.27 +0.1
881,241 - CA265_RS03705 0.27 +1.5
881,288 - CA265_RS03705 0.30 +0.4
881,353 + CA265_RS03705 0.33 +0.4
881,354 - CA265_RS03705 0.33 -0.1
881,361 + CA265_RS03705 0.33 -0.0
881,362 - CA265_RS03705 0.33 -1.1
881,416 - CA265_RS03705 0.36 +0.1
881,421 + CA265_RS03705 0.36 +0.1
881,476 + CA265_RS03705 0.39 -0.3

Or see this region's nucleotide sequence