Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03110 and CA265_RS03115 are separated by 68 nucleotides CA265_RS03115 and CA265_RS03120 are separated by 3 nucleotides CA265_RS03120 and CA265_RS03125 are separated by 431 nucleotides
CA265_RS03110: CA265_RS03110 - DUF58 domain-containing protein, at 771,037 to 771,954
_RS03110
CA265_RS03115: CA265_RS03115 - peroxiredoxin, at 772,023 to 772,484
_RS03115
CA265_RS03120: CA265_RS03120 - disulfide bond formation protein DsbA, at 772,488 to 773,006
_RS03120
CA265_RS03125: CA265_RS03125 - hypothetical protein, at 773,438 to 773,908
_RS03125
Position (kb) 772
773
774 Strain fitness (log2 ratio) -1
0
1 at 771.488 kb on + strand, within CA265_RS03110 at 771.510 kb on + strand, within CA265_RS03110 at 771.511 kb on - strand, within CA265_RS03110 at 771.516 kb on - strand, within CA265_RS03110 at 771.571 kb on - strand, within CA265_RS03110 at 771.602 kb on + strand, within CA265_RS03110 at 771.622 kb on - strand, within CA265_RS03110 at 771.622 kb on - strand, within CA265_RS03110 at 771.705 kb on + strand, within CA265_RS03110 at 771.781 kb on - strand, within CA265_RS03110 at 771.852 kb on - strand, within CA265_RS03110 at 771.866 kb on - strand at 771.868 kb on - strand at 771.925 kb on + strand at 772.022 kb on + strand at 772.022 kb on + strand at 772.022 kb on + strand at 772.042 kb on + strand at 772.042 kb on + strand at 772.204 kb on - strand, within CA265_RS03115 at 772.329 kb on + strand, within CA265_RS03115 at 772.361 kb on + strand, within CA265_RS03115 at 772.454 kb on - strand at 772.488 kb on - strand at 772.553 kb on - strand, within CA265_RS03120 at 772.588 kb on - strand, within CA265_RS03120 at 772.610 kb on + strand, within CA265_RS03120 at 772.736 kb on + strand, within CA265_RS03120 at 772.826 kb on - strand, within CA265_RS03120 at 772.869 kb on - strand, within CA265_RS03120 at 772.879 kb on + strand, within CA265_RS03120 at 773.004 kb on + strand at 773.004 kb on + strand at 773.041 kb on + strand at 773.091 kb on - strand at 773.091 kb on - strand at 773.106 kb on + strand at 773.236 kb on - strand at 773.254 kb on - strand at 773.293 kb on + strand at 773.336 kb on - strand at 773.405 kb on + strand at 773.430 kb on + strand at 773.451 kb on + strand at 773.452 kb on - strand at 773.634 kb on - strand, within CA265_RS03125 at 773.759 kb on - strand, within CA265_RS03125 at 773.927 kb on - strand at 773.937 kb on - strand at 774.004 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 771,488 + CA265_RS03110 0.49 -0.8 771,510 + CA265_RS03110 0.52 -0.4 771,511 - CA265_RS03110 0.52 +0.0 771,516 - CA265_RS03110 0.52 +0.3 771,571 - CA265_RS03110 0.58 +0.5 771,602 + CA265_RS03110 0.62 -0.3 771,622 - CA265_RS03110 0.64 +0.0 771,622 - CA265_RS03110 0.64 -0.4 771,705 + CA265_RS03110 0.73 +0.5 771,781 - CA265_RS03110 0.81 -0.1 771,852 - CA265_RS03110 0.89 -0.9 771,866 - -0.7 771,868 - +0.4 771,925 + -0.5 772,022 + +1.4 772,022 + -0.6 772,022 + +0.2 772,042 + +1.2 772,042 + -0.9 772,204 - CA265_RS03115 0.39 +0.3 772,329 + CA265_RS03115 0.66 +0.1 772,361 + CA265_RS03115 0.73 -0.3 772,454 - -1.1 772,488 - -0.7 772,553 - CA265_RS03120 0.13 -0.8 772,588 - CA265_RS03120 0.19 +0.8 772,610 + CA265_RS03120 0.24 +0.1 772,736 + CA265_RS03120 0.48 -0.0 772,826 - CA265_RS03120 0.65 +0.7 772,869 - CA265_RS03120 0.73 +0.2 772,879 + CA265_RS03120 0.75 +0.6 773,004 + -0.7 773,004 + -0.6 773,041 + +1.0 773,091 - -0.1 773,091 - -0.7 773,106 + -0.1 773,236 - +1.2 773,254 - +0.4 773,293 + +1.1 773,336 - -0.6 773,405 + +0.6 773,430 + +0.4 773,451 + +0.3 773,452 - -0.7 773,634 - CA265_RS03125 0.42 +0.2 773,759 - CA265_RS03125 0.68 -1.2 773,927 - -0.1 773,937 - +0.3 774,004 + +0.2
Or see this region's nucleotide sequence