Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02420 and CA265_RS02425 are separated by 92 nucleotides CA265_RS02425 and CA265_RS02430 are separated by 6 nucleotides CA265_RS02430 and CA265_RS02435 are separated by 50 nucleotides CA265_RS02435 and CA265_RS02440 are separated by 132 nucleotides
CA265_RS02420: CA265_RS02420 - hypothetical protein, at 598,504 to 600,921
_RS02420
CA265_RS02425: CA265_RS02425 - GTP cyclohydrolase, at 601,014 to 601,304
_RS02425
CA265_RS02430: CA265_RS02430 - ABC transporter ATPase, at 601,311 to 601,790
_RS02430
CA265_RS02435: CA265_RS02435 - hypothetical protein, at 601,841 to 602,317
_RS02435
CA265_RS02440: CA265_RS02440 - TldD protein, at 602,450 to 604,087
_RS02440
Position (kb) 601
602 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 600.423 kb on + strand, within CA265_RS02420 at 600.424 kb on - strand, within CA265_RS02420 at 600.454 kb on + strand, within CA265_RS02420 at 600.510 kb on + strand, within CA265_RS02420 at 600.525 kb on - strand, within CA265_RS02420 at 600.532 kb on - strand, within CA265_RS02420 at 600.580 kb on - strand, within CA265_RS02420 at 600.588 kb on + strand, within CA265_RS02420 at 600.589 kb on - strand, within CA265_RS02420 at 600.596 kb on - strand, within CA265_RS02420 at 600.596 kb on - strand, within CA265_RS02420 at 600.601 kb on - strand, within CA265_RS02420 at 600.628 kb on + strand, within CA265_RS02420 at 600.629 kb on - strand, within CA265_RS02420 at 600.658 kb on - strand, within CA265_RS02420 at 600.676 kb on - strand, within CA265_RS02420 at 600.676 kb on - strand, within CA265_RS02420 at 600.697 kb on + strand at 600.830 kb on + strand at 600.831 kb on - strand at 600.883 kb on - strand at 600.916 kb on - strand at 600.940 kb on - strand at 600.940 kb on - strand at 600.983 kb on - strand at 600.987 kb on + strand at 600.992 kb on + strand at 600.992 kb on + strand at 600.992 kb on + strand at 600.993 kb on - strand at 600.993 kb on - strand at 600.993 kb on - strand at 601.059 kb on + strand, within CA265_RS02425 at 601.060 kb on - strand, within CA265_RS02425 at 601.211 kb on + strand, within CA265_RS02425 at 601.251 kb on - strand, within CA265_RS02425 at 601.283 kb on - strand at 601.287 kb on - strand at 601.308 kb on + strand at 601.308 kb on + strand at 601.317 kb on + strand at 601.401 kb on - strand, within CA265_RS02430 at 601.436 kb on + strand, within CA265_RS02430 at 601.436 kb on + strand, within CA265_RS02430 at 601.439 kb on + strand, within CA265_RS02430 at 601.440 kb on - strand, within CA265_RS02430 at 601.491 kb on + strand, within CA265_RS02430 at 601.498 kb on + strand, within CA265_RS02430 at 601.535 kb on - strand, within CA265_RS02430 at 601.710 kb on + strand, within CA265_RS02430 at 601.731 kb on - strand, within CA265_RS02430 at 601.737 kb on - strand, within CA265_RS02430 at 601.877 kb on - strand at 601.899 kb on + strand, within CA265_RS02435 at 601.899 kb on + strand, within CA265_RS02435 at 601.976 kb on - strand, within CA265_RS02435 at 602.007 kb on - strand, within CA265_RS02435 at 602.043 kb on - strand, within CA265_RS02435 at 602.057 kb on - strand, within CA265_RS02435 at 602.087 kb on - strand, within CA265_RS02435 at 602.087 kb on - strand, within CA265_RS02435 at 602.129 kb on - strand, within CA265_RS02435 at 602.129 kb on - strand, within CA265_RS02435 at 602.144 kb on + strand, within CA265_RS02435 at 602.262 kb on + strand, within CA265_RS02435 at 602.292 kb on + strand at 602.423 kb on - strand at 602.437 kb on - strand at 602.468 kb on - strand at 602.476 kb on - strand at 602.484 kb on + strand at 602.559 kb on - strand at 602.561 kb on - strand at 602.601 kb on + strand at 602.602 kb on - strand at 602.630 kb on + strand, within CA265_RS02440 at 602.686 kb on + strand, within CA265_RS02440 at 602.686 kb on + strand, within CA265_RS02440 at 602.686 kb on + strand, within CA265_RS02440 at 602.699 kb on - strand, within CA265_RS02440
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 600,423 + CA265_RS02420 0.79 -1.6 600,424 - CA265_RS02420 0.79 +0.4 600,454 + CA265_RS02420 0.81 +0.8 600,510 + CA265_RS02420 0.83 -1.2 600,525 - CA265_RS02420 0.84 -1.5 600,532 - CA265_RS02420 0.84 -0.3 600,580 - CA265_RS02420 0.86 +0.3 600,588 + CA265_RS02420 0.86 -0.0 600,589 - CA265_RS02420 0.86 -0.2 600,596 - CA265_RS02420 0.87 +0.0 600,596 - CA265_RS02420 0.87 -0.9 600,601 - CA265_RS02420 0.87 +0.3 600,628 + CA265_RS02420 0.88 -0.5 600,629 - CA265_RS02420 0.88 -0.2 600,658 - CA265_RS02420 0.89 -0.1 600,676 - CA265_RS02420 0.90 -0.2 600,676 - CA265_RS02420 0.90 +0.5 600,697 + +0.1 600,830 + -0.4 600,831 - +0.3 600,883 - +0.1 600,916 - -0.7 600,940 - -0.3 600,940 - +0.3 600,983 - -0.1 600,987 + -2.0 600,992 + -0.7 600,992 + -0.2 600,992 + -1.1 600,993 - +0.1 600,993 - +0.9 600,993 - +0.1 601,059 + CA265_RS02425 0.15 -0.3 601,060 - CA265_RS02425 0.16 -0.6 601,211 + CA265_RS02425 0.68 +0.3 601,251 - CA265_RS02425 0.81 +0.4 601,283 - +0.2 601,287 - +0.1 601,308 + +0.1 601,308 + -0.0 601,317 + +0.8 601,401 - CA265_RS02430 0.19 -0.1 601,436 + CA265_RS02430 0.26 -0.4 601,436 + CA265_RS02430 0.26 -0.4 601,439 + CA265_RS02430 0.27 -0.3 601,440 - CA265_RS02430 0.27 +0.4 601,491 + CA265_RS02430 0.38 -0.4 601,498 + CA265_RS02430 0.39 -0.1 601,535 - CA265_RS02430 0.47 -1.1 601,710 + CA265_RS02430 0.83 +0.3 601,731 - CA265_RS02430 0.88 +0.0 601,737 - CA265_RS02430 0.89 -1.0 601,877 - +1.4 601,899 + CA265_RS02435 0.12 -0.9 601,899 + CA265_RS02435 0.12 -0.4 601,976 - CA265_RS02435 0.28 -0.1 602,007 - CA265_RS02435 0.35 +0.4 602,043 - CA265_RS02435 0.42 +0.9 602,057 - CA265_RS02435 0.45 -0.5 602,087 - CA265_RS02435 0.52 -1.0 602,087 - CA265_RS02435 0.52 -1.3 602,129 - CA265_RS02435 0.60 -0.2 602,129 - CA265_RS02435 0.60 -0.4 602,144 + CA265_RS02435 0.64 -0.6 602,262 + CA265_RS02435 0.88 +0.7 602,292 + +0.2 602,423 - +0.8 602,437 - +0.3 602,468 - +1.1 602,476 - +0.3 602,484 + -0.1 602,559 - -0.2 602,561 - +0.1 602,601 + -3.0 602,602 - +1.6 602,630 + CA265_RS02440 0.11 +0.0 602,686 + CA265_RS02440 0.14 -0.2 602,686 + CA265_RS02440 0.14 +0.0 602,686 + CA265_RS02440 0.14 -1.0 602,699 - CA265_RS02440 0.15 +0.6
Or see this region's nucleotide sequence