Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01200

Experiment: R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS01185 and CA265_RS01190 are separated by 24 nucleotidesCA265_RS01190 and CA265_RS01195 are separated by 18 nucleotidesCA265_RS01195 and CA265_RS01200 are separated by 34 nucleotidesCA265_RS01200 and CA265_RS01205 are separated by 21 nucleotidesCA265_RS01205 and CA265_RS01210 are separated by 203 nucleotides CA265_RS01185: CA265_RS01185 - hypothetical protein, at 298,066 to 298,494 _RS01185 CA265_RS01190: CA265_RS01190 - hypothetical protein, at 298,519 to 298,962 _RS01190 CA265_RS01195: CA265_RS01195 - hypothetical protein, at 298,981 to 299,394 _RS01195 CA265_RS01200: CA265_RS01200 - hypothetical protein, at 299,429 to 299,950 _RS01200 CA265_RS01205: CA265_RS01205 - import component protein, at 299,972 to 300,304 _RS01205 CA265_RS01210: CA265_RS01210 - LuxR family transcriptional regulator, at 300,508 to 302,385 _RS01210 Position (kb) 299 300Strain fitness (log2 ratio) -2 -1 0 1 2at 298.482 kb on + strandat 298.484 kb on + strandat 298.531 kb on - strandat 298.532 kb on + strandat 298.563 kb on + strandat 298.575 kb on + strand, within CA265_RS01190at 298.583 kb on + strand, within CA265_RS01190at 298.584 kb on - strand, within CA265_RS01190at 298.632 kb on - strand, within CA265_RS01190at 298.634 kb on + strand, within CA265_RS01190at 298.664 kb on - strand, within CA265_RS01190at 298.678 kb on - strand, within CA265_RS01190at 298.691 kb on + strand, within CA265_RS01190at 298.692 kb on - strand, within CA265_RS01190at 298.721 kb on + strand, within CA265_RS01190at 298.743 kb on - strand, within CA265_RS01190at 298.767 kb on + strand, within CA265_RS01190at 298.768 kb on - strand, within CA265_RS01190at 298.768 kb on - strand, within CA265_RS01190at 298.769 kb on + strand, within CA265_RS01190at 298.769 kb on + strand, within CA265_RS01190at 298.837 kb on - strand, within CA265_RS01190at 298.867 kb on - strand, within CA265_RS01190at 298.949 kb on - strandat 298.982 kb on + strandat 299.033 kb on - strand, within CA265_RS01195at 299.045 kb on - strand, within CA265_RS01195at 299.078 kb on + strand, within CA265_RS01195at 299.078 kb on + strand, within CA265_RS01195at 299.082 kb on + strand, within CA265_RS01195at 299.107 kb on - strand, within CA265_RS01195at 299.151 kb on + strand, within CA265_RS01195at 299.152 kb on - strand, within CA265_RS01195at 299.186 kb on + strand, within CA265_RS01195at 299.186 kb on + strand, within CA265_RS01195at 299.250 kb on + strand, within CA265_RS01195at 299.281 kb on + strand, within CA265_RS01195at 299.282 kb on - strand, within CA265_RS01195at 299.282 kb on - strand, within CA265_RS01195at 299.292 kb on + strand, within CA265_RS01195at 299.368 kb on - strandat 299.378 kb on - strandat 299.406 kb on + strandat 299.407 kb on - strandat 299.427 kb on - strandat 299.431 kb on - strandat 299.441 kb on - strandat 299.499 kb on + strand, within CA265_RS01200at 299.612 kb on + strand, within CA265_RS01200at 299.619 kb on - strand, within CA265_RS01200at 299.619 kb on - strand, within CA265_RS01200at 299.698 kb on + strand, within CA265_RS01200at 299.730 kb on - strand, within CA265_RS01200at 299.754 kb on + strandat 299.755 kb on - strand, within CA265_RS01200at 299.755 kb on - strand, within CA265_RS01200at 299.757 kb on + strand, within CA265_RS01200at 299.757 kb on + strand, within CA265_RS01200at 299.758 kb on - strand, within CA265_RS01200at 299.764 kb on + strand, within CA265_RS01200at 299.795 kb on - strand, within CA265_RS01200at 299.810 kb on - strand, within CA265_RS01200at 299.876 kb on + strand, within CA265_RS01200at 299.877 kb on - strand, within CA265_RS01200at 300.021 kb on - strand, within CA265_RS01205at 300.053 kb on - strand, within CA265_RS01205at 300.053 kb on - strand, within CA265_RS01205at 300.071 kb on + strand, within CA265_RS01205at 300.072 kb on - strand, within CA265_RS01205at 300.144 kb on - strand, within CA265_RS01205at 300.149 kb on - strand, within CA265_RS01205at 300.153 kb on - strand, within CA265_RS01205at 300.172 kb on + strand, within CA265_RS01205at 300.202 kb on + strand, within CA265_RS01205at 300.203 kb on - strand, within CA265_RS01205at 300.268 kb on + strand, within CA265_RS01205at 300.268 kb on + strand, within CA265_RS01205at 300.269 kb on - strand, within CA265_RS01205at 300.379 kb on + strandat 300.379 kb on + strandat 300.446 kb on + strandat 300.446 kb on + strandat 300.447 kb on - strandat 300.533 kb on + strandat 300.534 kb on - strandat 300.588 kb on - strandat 300.589 kb on + strandat 300.589 kb on + strandat 300.641 kb on + strandat 300.648 kb on - strandat 300.654 kb on - strandat 300.772 kb on + strand, within CA265_RS01210at 300.794 kb on - strand, within CA265_RS01210at 300.794 kb on - strand, within CA265_RS01210at 300.844 kb on - strand, within CA265_RS01210at 300.847 kb on + strand, within CA265_RS01210at 300.847 kb on + strand, within CA265_RS01210at 300.848 kb on - strand, within CA265_RS01210at 300.848 kb on - strand, within CA265_RS01210at 300.848 kb on - strand, within CA265_RS01210at 300.848 kb on - strand, within CA265_RS01210at 300.851 kb on - strand, within CA265_RS01210at 300.890 kb on + strand, within CA265_RS01210at 300.917 kb on + strand, within CA265_RS01210at 300.917 kb on + strand, within CA265_RS01210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A
remove
298,482 + +0.2
298,484 + -0.5
298,531 - +0.5
298,532 + -0.1
298,563 + -0.2
298,575 + CA265_RS01190 0.13 +0.7
298,583 + CA265_RS01190 0.14 +0.2
298,584 - CA265_RS01190 0.15 -0.1
298,632 - CA265_RS01190 0.25 -1.0
298,634 + CA265_RS01190 0.26 -0.1
298,664 - CA265_RS01190 0.33 +0.7
298,678 - CA265_RS01190 0.36 -0.1
298,691 + CA265_RS01190 0.39 -0.0
298,692 - CA265_RS01190 0.39 +0.2
298,721 + CA265_RS01190 0.45 +0.9
298,743 - CA265_RS01190 0.50 +1.0
298,767 + CA265_RS01190 0.56 +0.6
298,768 - CA265_RS01190 0.56 -0.5
298,768 - CA265_RS01190 0.56 -0.2
298,769 + CA265_RS01190 0.56 -1.6
298,769 + CA265_RS01190 0.56 +0.4
298,837 - CA265_RS01190 0.72 +0.2
298,867 - CA265_RS01190 0.78 +0.7
298,949 - -1.3
298,982 + -0.2
299,033 - CA265_RS01195 0.13 -1.3
299,045 - CA265_RS01195 0.15 +0.3
299,078 + CA265_RS01195 0.23 +0.7
299,078 + CA265_RS01195 0.23 +1.4
299,082 + CA265_RS01195 0.24 -0.2
299,107 - CA265_RS01195 0.30 -1.0
299,151 + CA265_RS01195 0.41 +0.1
299,152 - CA265_RS01195 0.41 -0.1
299,186 + CA265_RS01195 0.50 -1.1
299,186 + CA265_RS01195 0.50 -0.3
299,250 + CA265_RS01195 0.65 -0.7
299,281 + CA265_RS01195 0.72 -1.0
299,282 - CA265_RS01195 0.73 +0.4
299,282 - CA265_RS01195 0.73 -0.2
299,292 + CA265_RS01195 0.75 +0.5
299,368 - +0.8
299,378 - +0.6
299,406 + +0.1
299,407 - +1.5
299,427 - +1.4
299,431 - -0.1
299,441 - +0.2
299,499 + CA265_RS01200 0.13 +0.9
299,612 + CA265_RS01200 0.35 -0.1
299,619 - CA265_RS01200 0.36 -0.9
299,619 - CA265_RS01200 0.36 +0.3
299,698 + CA265_RS01200 0.52 +2.0
299,730 - CA265_RS01200 0.58 +1.2
299,754 + +2.3
299,755 - CA265_RS01200 0.62 +0.1
299,755 - CA265_RS01200 0.62 +0.9
299,757 + CA265_RS01200 0.63 +0.0
299,757 + CA265_RS01200 0.63 -0.2
299,758 - CA265_RS01200 0.63 -1.4
299,764 + CA265_RS01200 0.64 -0.5
299,795 - CA265_RS01200 0.70 -0.2
299,810 - CA265_RS01200 0.73 +1.7
299,876 + CA265_RS01200 0.86 +0.1
299,877 - CA265_RS01200 0.86 -0.9
300,021 - CA265_RS01205 0.15 +0.4
300,053 - CA265_RS01205 0.24 -0.6
300,053 - CA265_RS01205 0.24 -0.8
300,071 + CA265_RS01205 0.30 +0.4
300,072 - CA265_RS01205 0.30 -0.6
300,144 - CA265_RS01205 0.52 -0.5
300,149 - CA265_RS01205 0.53 -1.9
300,153 - CA265_RS01205 0.54 +0.7
300,172 + CA265_RS01205 0.60 +0.3
300,202 + CA265_RS01205 0.69 -0.1
300,203 - CA265_RS01205 0.69 -0.1
300,268 + CA265_RS01205 0.89 +0.0
300,268 + CA265_RS01205 0.89 -2.0
300,269 - CA265_RS01205 0.89 +0.5
300,379 + +0.5
300,379 + -0.7
300,446 + +0.7
300,446 + +0.1
300,447 - -0.4
300,533 + -0.3
300,534 - -1.7
300,588 - +0.5
300,589 + +1.4
300,589 + -1.0
300,641 + +0.0
300,648 - -0.2
300,654 - +0.1
300,772 + CA265_RS01210 0.14 +2.0
300,794 - CA265_RS01210 0.15 +0.0
300,794 - CA265_RS01210 0.15 -0.3
300,844 - CA265_RS01210 0.18 +0.4
300,847 + CA265_RS01210 0.18 +0.1
300,847 + CA265_RS01210 0.18 -0.2
300,848 - CA265_RS01210 0.18 +0.6
300,848 - CA265_RS01210 0.18 +0.5
300,848 - CA265_RS01210 0.18 -0.8
300,848 - CA265_RS01210 0.18 +0.5
300,851 - CA265_RS01210 0.18 +1.9
300,890 + CA265_RS01210 0.20 +0.4
300,917 + CA265_RS01210 0.22 -0.0
300,917 + CA265_RS01210 0.22 +0.6

Or see this region's nucleotide sequence