Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00460 and CA265_RS00465 are separated by 2 nucleotides CA265_RS00465 and CA265_RS00470 are separated by 83 nucleotides CA265_RS00470 and CA265_RS00475 are separated by 29 nucleotides
CA265_RS00460: CA265_RS00460 - alpha/beta hydrolase, at 99,416 to 100,477
_RS00460
CA265_RS00465: CA265_RS00465 - cupin, at 100,480 to 100,956
_RS00465
CA265_RS00470: CA265_RS00470 - hypothetical protein, at 101,040 to 101,687
_RS00470
CA265_RS00475: CA265_RS00475 - isoquinoline 1-oxidoreductase, at 101,717 to 103,978
_RS00475
Position (kb) 100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 99.488 kb on - strand at 99.488 kb on - strand at 99.517 kb on + strand at 99.517 kb on + strand at 99.527 kb on + strand, within CA265_RS00460 at 99.527 kb on + strand, within CA265_RS00460 at 99.584 kb on + strand, within CA265_RS00460 at 99.585 kb on - strand, within CA265_RS00460 at 99.585 kb on - strand, within CA265_RS00460 at 99.623 kb on - strand, within CA265_RS00460 at 99.713 kb on + strand, within CA265_RS00460 at 99.740 kb on + strand, within CA265_RS00460 at 99.741 kb on - strand, within CA265_RS00460 at 99.745 kb on + strand, within CA265_RS00460 at 99.801 kb on + strand, within CA265_RS00460 at 99.801 kb on + strand, within CA265_RS00460 at 99.851 kb on - strand, within CA265_RS00460 at 99.854 kb on - strand, within CA265_RS00460 at 99.861 kb on - strand, within CA265_RS00460 at 99.919 kb on + strand, within CA265_RS00460 at 99.970 kb on - strand, within CA265_RS00460 at 99.980 kb on - strand, within CA265_RS00460 at 100.010 kb on - strand, within CA265_RS00460 at 100.032 kb on + strand, within CA265_RS00460 at 100.097 kb on + strand, within CA265_RS00460 at 100.170 kb on + strand, within CA265_RS00460 at 100.171 kb on - strand, within CA265_RS00460 at 100.171 kb on - strand, within CA265_RS00460 at 100.319 kb on + strand, within CA265_RS00460 at 100.320 kb on - strand, within CA265_RS00460 at 100.320 kb on - strand, within CA265_RS00460 at 100.324 kb on + strand, within CA265_RS00460 at 100.324 kb on + strand, within CA265_RS00460 at 100.324 kb on + strand, within CA265_RS00460 at 100.409 kb on + strand at 100.424 kb on + strand at 100.425 kb on - strand at 100.473 kb on + strand at 100.474 kb on - strand at 100.476 kb on - strand at 100.495 kb on - strand at 100.499 kb on - strand at 100.656 kb on - strand, within CA265_RS00465 at 100.680 kb on + strand, within CA265_RS00465 at 100.754 kb on + strand, within CA265_RS00465 at 100.755 kb on - strand, within CA265_RS00465 at 100.759 kb on + strand, within CA265_RS00465 at 100.789 kb on - strand, within CA265_RS00465 at 100.811 kb on + strand, within CA265_RS00465 at 100.987 kb on - strand at 101.018 kb on - strand at 101.045 kb on + strand at 101.055 kb on - strand at 101.057 kb on + strand at 101.058 kb on - strand at 101.122 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.128 kb on + strand, within CA265_RS00470 at 101.213 kb on + strand, within CA265_RS00470 at 101.232 kb on + strand, within CA265_RS00470 at 101.232 kb on + strand, within CA265_RS00470 at 101.240 kb on - strand, within CA265_RS00470 at 101.346 kb on - strand, within CA265_RS00470 at 101.355 kb on + strand, within CA265_RS00470 at 101.388 kb on - strand, within CA265_RS00470 at 101.390 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.630 kb on + strand at 101.667 kb on + strand at 101.667 kb on + strand at 101.686 kb on - strand at 101.759 kb on - strand at 101.759 kb on - strand at 101.801 kb on - strand at 101.818 kb on - strand at 101.822 kb on - strand at 101.822 kb on - strand at 101.880 kb on - strand at 101.880 kb on - strand at 101.900 kb on - strand at 101.946 kb on + strand, within CA265_RS00475
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 99,488 - +0.1 99,488 - +0.7 99,517 + +0.3 99,517 + -0.0 99,527 + CA265_RS00460 0.10 -1.1 99,527 + CA265_RS00460 0.10 -0.5 99,584 + CA265_RS00460 0.16 +0.2 99,585 - CA265_RS00460 0.16 +2.0 99,585 - CA265_RS00460 0.16 -0.6 99,623 - CA265_RS00460 0.19 +0.1 99,713 + CA265_RS00460 0.28 +0.7 99,740 + CA265_RS00460 0.31 -0.6 99,741 - CA265_RS00460 0.31 -0.6 99,745 + CA265_RS00460 0.31 -0.0 99,801 + CA265_RS00460 0.36 +0.0 99,801 + CA265_RS00460 0.36 -1.1 99,851 - CA265_RS00460 0.41 -0.3 99,854 - CA265_RS00460 0.41 +0.6 99,861 - CA265_RS00460 0.42 +0.5 99,919 + CA265_RS00460 0.47 +0.6 99,970 - CA265_RS00460 0.52 -0.8 99,980 - CA265_RS00460 0.53 -0.7 100,010 - CA265_RS00460 0.56 +0.5 100,032 + CA265_RS00460 0.58 +0.5 100,097 + CA265_RS00460 0.64 -0.5 100,170 + CA265_RS00460 0.71 -0.2 100,171 - CA265_RS00460 0.71 +0.3 100,171 - CA265_RS00460 0.71 -0.2 100,319 + CA265_RS00460 0.85 -0.9 100,320 - CA265_RS00460 0.85 -1.2 100,320 - CA265_RS00460 0.85 -1.0 100,324 + CA265_RS00460 0.85 +0.3 100,324 + CA265_RS00460 0.85 +0.1 100,324 + CA265_RS00460 0.85 +1.2 100,409 + +0.1 100,424 + -0.6 100,425 - +0.8 100,473 + -0.8 100,474 - +1.0 100,476 - +0.7 100,495 - -0.1 100,499 - -0.5 100,656 - CA265_RS00465 0.37 +1.0 100,680 + CA265_RS00465 0.42 -0.7 100,754 + CA265_RS00465 0.57 +0.3 100,755 - CA265_RS00465 0.58 +0.4 100,759 + CA265_RS00465 0.58 -1.1 100,789 - CA265_RS00465 0.65 -0.5 100,811 + CA265_RS00465 0.69 +1.4 100,987 - +0.7 101,018 - +0.1 101,045 + -0.3 101,055 - -1.7 101,057 + -1.1 101,058 - +0.9 101,122 + CA265_RS00470 0.13 -0.7 101,126 + CA265_RS00470 0.13 -0.1 101,126 + CA265_RS00470 0.13 -1.1 101,126 + CA265_RS00470 0.13 -0.9 101,126 + CA265_RS00470 0.13 -0.1 101,127 - CA265_RS00470 0.13 +0.4 101,127 - CA265_RS00470 0.13 -0.3 101,127 - CA265_RS00470 0.13 -0.6 101,127 - CA265_RS00470 0.13 -0.4 101,127 - CA265_RS00470 0.13 +0.5 101,127 - CA265_RS00470 0.13 -0.6 101,128 + CA265_RS00470 0.14 +0.3 101,213 + CA265_RS00470 0.27 -2.9 101,232 + CA265_RS00470 0.30 +0.7 101,232 + CA265_RS00470 0.30 -0.9 101,240 - CA265_RS00470 0.31 -0.4 101,346 - CA265_RS00470 0.47 -2.0 101,355 + CA265_RS00470 0.49 -0.6 101,388 - CA265_RS00470 0.54 +0.7 101,390 + CA265_RS00470 0.54 +0.5 101,525 + CA265_RS00470 0.75 -0.1 101,525 + CA265_RS00470 0.75 -0.6 101,525 + CA265_RS00470 0.75 -0.7 101,630 + -0.3 101,667 + -0.9 101,667 + -1.3 101,686 - +0.1 101,759 - +1.2 101,759 - +0.6 101,801 - -2.0 101,818 - +0.1 101,822 - +1.0 101,822 - +0.3 101,880 - -1.8 101,880 - +0.8 101,900 - +0.8 101,946 + CA265_RS00475 0.10 -1.7
Or see this region's nucleotide sequence