Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00410 and CA265_RS00415 are separated by 29 nucleotides CA265_RS00415 and CA265_RS00420 are separated by 86 nucleotides CA265_RS00420 and CA265_RS00425 are separated by 168 nucleotides
CA265_RS00410: CA265_RS00410 - hypothetical protein, at 90,880 to 92,400
_RS00410
CA265_RS00415: CA265_RS00415 - cupin, at 92,430 to 92,921
_RS00415
CA265_RS00420: CA265_RS00420 - FUSC family protein, at 93,008 to 93,259
_RS00420
CA265_RS00425: CA265_RS00425 - AraC family transcriptional regulator, at 93,428 to 94,330
_RS00425
Position (kb) 93
94 Strain fitness (log2 ratio) -2
-1
0
1 at 92.091 kb on - strand, within CA265_RS00410 at 92.131 kb on - strand, within CA265_RS00410 at 92.149 kb on + strand, within CA265_RS00410 at 92.156 kb on - strand, within CA265_RS00410 at 92.181 kb on + strand, within CA265_RS00410 at 92.227 kb on - strand, within CA265_RS00410 at 92.266 kb on - strand at 92.303 kb on - strand at 92.306 kb on + strand at 92.307 kb on - strand at 92.307 kb on - strand at 92.409 kb on + strand at 92.428 kb on + strand at 92.628 kb on - strand, within CA265_RS00415 at 92.733 kb on + strand, within CA265_RS00415 at 92.733 kb on + strand, within CA265_RS00415 at 92.733 kb on + strand, within CA265_RS00415 at 92.734 kb on - strand, within CA265_RS00415 at 92.734 kb on - strand, within CA265_RS00415 at 92.854 kb on + strand, within CA265_RS00415 at 92.878 kb on + strand at 92.909 kb on + strand at 93.080 kb on - strand, within CA265_RS00420 at 93.080 kb on - strand, within CA265_RS00420 at 93.081 kb on + strand, within CA265_RS00420 at 93.143 kb on + strand, within CA265_RS00420 at 93.280 kb on - strand at 93.280 kb on - strand at 93.305 kb on + strand at 93.526 kb on - strand, within CA265_RS00425 at 93.583 kb on + strand, within CA265_RS00425 at 93.589 kb on + strand, within CA265_RS00425 at 93.605 kb on + strand, within CA265_RS00425 at 93.631 kb on + strand, within CA265_RS00425 at 93.819 kb on + strand, within CA265_RS00425 at 93.819 kb on + strand, within CA265_RS00425 at 93.820 kb on - strand, within CA265_RS00425 at 93.820 kb on - strand, within CA265_RS00425 at 93.827 kb on + strand, within CA265_RS00425 at 93.828 kb on - strand, within CA265_RS00425 at 93.859 kb on + strand, within CA265_RS00425 at 93.901 kb on + strand, within CA265_RS00425 at 93.942 kb on - strand, within CA265_RS00425 at 94.010 kb on - strand, within CA265_RS00425 at 94.049 kb on + strand, within CA265_RS00425 at 94.062 kb on + strand, within CA265_RS00425 at 94.063 kb on - strand, within CA265_RS00425 at 94.063 kb on - strand, within CA265_RS00425 at 94.137 kb on + strand, within CA265_RS00425 at 94.149 kb on + strand, within CA265_RS00425 at 94.150 kb on - strand, within CA265_RS00425 at 94.191 kb on + strand, within CA265_RS00425 at 94.192 kb on - strand, within CA265_RS00425 at 94.247 kb on + strand at 94.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 92,091 - CA265_RS00410 0.80 +0.3 92,131 - CA265_RS00410 0.82 +0.1 92,149 + CA265_RS00410 0.83 -1.3 92,156 - CA265_RS00410 0.84 +0.4 92,181 + CA265_RS00410 0.86 +0.7 92,227 - CA265_RS00410 0.89 +0.4 92,266 - +0.8 92,303 - -0.7 92,306 + +1.2 92,307 - -0.4 92,307 - -0.4 92,409 + +0.7 92,428 + -0.2 92,628 - CA265_RS00415 0.40 -0.3 92,733 + CA265_RS00415 0.62 +0.6 92,733 + CA265_RS00415 0.62 +0.3 92,733 + CA265_RS00415 0.62 +1.5 92,734 - CA265_RS00415 0.62 +0.9 92,734 - CA265_RS00415 0.62 -0.4 92,854 + CA265_RS00415 0.86 +0.1 92,878 + -0.3 92,909 + +0.4 93,080 - CA265_RS00420 0.29 -0.0 93,080 - CA265_RS00420 0.29 -0.3 93,081 + CA265_RS00420 0.29 +0.5 93,143 + CA265_RS00420 0.54 +0.9 93,280 - -1.6 93,280 - -0.3 93,305 + +0.2 93,526 - CA265_RS00425 0.11 -0.4 93,583 + CA265_RS00425 0.17 -0.5 93,589 + CA265_RS00425 0.18 -1.8 93,605 + CA265_RS00425 0.20 +0.1 93,631 + CA265_RS00425 0.22 +0.8 93,819 + CA265_RS00425 0.43 -1.1 93,819 + CA265_RS00425 0.43 -0.2 93,820 - CA265_RS00425 0.43 -0.7 93,820 - CA265_RS00425 0.43 -0.5 93,827 + CA265_RS00425 0.44 -1.4 93,828 - CA265_RS00425 0.44 +0.1 93,859 + CA265_RS00425 0.48 +1.0 93,901 + CA265_RS00425 0.52 -0.5 93,942 - CA265_RS00425 0.57 -0.8 94,010 - CA265_RS00425 0.64 -0.1 94,049 + CA265_RS00425 0.69 -0.5 94,062 + CA265_RS00425 0.70 -0.3 94,063 - CA265_RS00425 0.70 +0.2 94,063 - CA265_RS00425 0.70 +0.9 94,137 + CA265_RS00425 0.79 +0.7 94,149 + CA265_RS00425 0.80 +0.6 94,150 - CA265_RS00425 0.80 -0.5 94,191 + CA265_RS00425 0.84 -0.4 94,192 - CA265_RS00425 0.85 -0.5 94,247 + +0.6 94,247 + -0.3
Or see this region's nucleotide sequence