Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00295 and CA265_RS00300 are separated by 123 nucleotides CA265_RS00300 and CA265_RS00305 are separated by 149 nucleotides CA265_RS00305 and CA265_RS00310 are separated by 92 nucleotides
CA265_RS00295: CA265_RS00295 - hypothetical protein, at 69,970 to 70,938
_RS00295
CA265_RS00300: CA265_RS00300 - damage-inducible protein DinB, at 71,062 to 71,532
_RS00300
CA265_RS00305: CA265_RS00305 - transcriptional regulator, at 71,682 to 72,074
_RS00305
CA265_RS00310: CA265_RS00310 - oxidoreductase, at 72,167 to 72,907
_RS00310
Position (kb) 71
72 Strain fitness (log2 ratio) -2
-1
0
1 at 70.139 kb on + strand, within CA265_RS00295 at 70.140 kb on - strand, within CA265_RS00295 at 70.171 kb on - strand, within CA265_RS00295 at 70.214 kb on + strand, within CA265_RS00295 at 70.260 kb on + strand, within CA265_RS00295 at 70.345 kb on - strand, within CA265_RS00295 at 70.350 kb on - strand, within CA265_RS00295 at 70.396 kb on - strand, within CA265_RS00295 at 70.396 kb on - strand, within CA265_RS00295 at 70.396 kb on - strand, within CA265_RS00295 at 70.396 kb on - strand, within CA265_RS00295 at 70.406 kb on + strand, within CA265_RS00295 at 70.416 kb on + strand, within CA265_RS00295 at 70.533 kb on - strand, within CA265_RS00295 at 70.538 kb on - strand, within CA265_RS00295 at 70.559 kb on - strand, within CA265_RS00295 at 70.636 kb on - strand, within CA265_RS00295 at 70.853 kb on + strand at 70.854 kb on - strand at 70.937 kb on + strand at 70.937 kb on - strand at 70.982 kb on + strand at 70.989 kb on + strand at 71.039 kb on + strand at 71.044 kb on + strand at 71.094 kb on + strand at 71.094 kb on + strand at 71.099 kb on - strand at 71.186 kb on + strand, within CA265_RS00300 at 71.244 kb on - strand, within CA265_RS00300 at 71.319 kb on + strand, within CA265_RS00300 at 71.375 kb on - strand, within CA265_RS00300 at 71.377 kb on + strand, within CA265_RS00300 at 71.377 kb on + strand, within CA265_RS00300 at 71.389 kb on + strand, within CA265_RS00300 at 71.432 kb on - strand, within CA265_RS00300 at 71.497 kb on + strand at 71.498 kb on - strand at 71.501 kb on - strand at 71.521 kb on - strand at 71.540 kb on + strand at 71.551 kb on + strand at 71.563 kb on - strand at 71.565 kb on - strand at 71.643 kb on + strand at 71.645 kb on + strand at 71.645 kb on + strand at 71.684 kb on - strand at 71.687 kb on + strand at 71.744 kb on + strand, within CA265_RS00305 at 71.744 kb on + strand, within CA265_RS00305 at 71.814 kb on + strand, within CA265_RS00305 at 71.814 kb on + strand, within CA265_RS00305 at 71.827 kb on - strand, within CA265_RS00305 at 72.244 kb on - strand, within CA265_RS00310 at 72.271 kb on + strand, within CA265_RS00310 at 72.271 kb on + strand, within CA265_RS00310 at 72.271 kb on + strand, within CA265_RS00310 at 72.272 kb on - strand, within CA265_RS00310 at 72.361 kb on + strand, within CA265_RS00310 at 72.449 kb on + strand, within CA265_RS00310 at 72.449 kb on + strand, within CA265_RS00310 at 72.476 kb on - strand, within CA265_RS00310 at 72.489 kb on - strand, within CA265_RS00310
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 70,139 + CA265_RS00295 0.17 -0.4 70,140 - CA265_RS00295 0.18 -0.3 70,171 - CA265_RS00295 0.21 -0.4 70,214 + CA265_RS00295 0.25 +0.0 70,260 + CA265_RS00295 0.30 +0.2 70,345 - CA265_RS00295 0.39 +0.3 70,350 - CA265_RS00295 0.39 -0.9 70,396 - CA265_RS00295 0.44 +0.5 70,396 - CA265_RS00295 0.44 -1.7 70,396 - CA265_RS00295 0.44 -1.3 70,396 - CA265_RS00295 0.44 +0.1 70,406 + CA265_RS00295 0.45 -0.1 70,416 + CA265_RS00295 0.46 +0.0 70,533 - CA265_RS00295 0.58 -2.2 70,538 - CA265_RS00295 0.59 -0.1 70,559 - CA265_RS00295 0.61 +0.6 70,636 - CA265_RS00295 0.69 -1.1 70,853 + -0.1 70,854 - +0.1 70,937 + -1.7 70,937 - -0.3 70,982 + -0.7 70,989 + +0.1 71,039 + -0.4 71,044 + -0.7 71,094 + -0.2 71,094 + +0.2 71,099 - -0.8 71,186 + CA265_RS00300 0.26 -0.6 71,244 - CA265_RS00300 0.39 +0.1 71,319 + CA265_RS00300 0.55 -0.5 71,375 - CA265_RS00300 0.66 +0.7 71,377 + CA265_RS00300 0.67 +0.5 71,377 + CA265_RS00300 0.67 +1.0 71,389 + CA265_RS00300 0.69 +0.8 71,432 - CA265_RS00300 0.79 +0.6 71,497 + -0.4 71,498 - -0.3 71,501 - -1.0 71,521 - -0.1 71,540 + -0.3 71,551 + +0.0 71,563 - -0.9 71,565 - -1.3 71,643 + -0.7 71,645 + -0.1 71,645 + +0.1 71,684 - -1.2 71,687 + -0.6 71,744 + CA265_RS00305 0.16 +0.1 71,744 + CA265_RS00305 0.16 +0.8 71,814 + CA265_RS00305 0.34 -0.5 71,814 + CA265_RS00305 0.34 +0.3 71,827 - CA265_RS00305 0.37 -0.2 72,244 - CA265_RS00310 0.10 -1.0 72,271 + CA265_RS00310 0.14 +1.1 72,271 + CA265_RS00310 0.14 -0.4 72,271 + CA265_RS00310 0.14 -1.3 72,272 - CA265_RS00310 0.14 +1.7 72,361 + CA265_RS00310 0.26 +0.2 72,449 + CA265_RS00310 0.38 -0.4 72,449 + CA265_RS00310 0.38 +0.3 72,476 - CA265_RS00310 0.42 -0.4 72,489 - CA265_RS00310 0.43 +0.0
Or see this region's nucleotide sequence