Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19915

Experiment: CDM1 without Arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Arginine
2,266,623	+		BBR_RS19910	0.14	+0.4
2,266,633	+		BBR_RS19910	0.16	+0.6
2,266,633	+		BBR_RS19910	0.16	-0.0
2,266,633	+		BBR_RS19910	0.16	+0.2
2,266,636	-		BBR_RS19910	0.16	+0.7
2,266,641	-		BBR_RS19910	0.17	+0.8
2,266,641	-		BBR_RS19910	0.17	+0.6
2,266,641	-		BBR_RS19910	0.17	-0.8
2,266,641	-		BBR_RS19910	0.17	+0.1
2,266,652	+		BBR_RS19910	0.19	-1.2
2,266,677	-		BBR_RS19910	0.23	+0.4
2,266,689	-		BBR_RS19910	0.25	-0.3
2,266,694	-		BBR_RS19910	0.25	-0.6
2,266,694	-		BBR_RS19910	0.25	+0.1
2,266,703	+		BBR_RS19910	0.27	+1.3
2,266,705	+		BBR_RS19910	0.27	-0.3
2,266,705	+		BBR_RS19910	0.27	+0.3
2,266,706	-		BBR_RS19910	0.27	-0.8
2,266,709	+		BBR_RS19910	0.28	+0.3
2,266,711	+		BBR_RS19910	0.28	-0.8
2,266,711	+		BBR_RS19910	0.28	-0.9
2,266,711	-		BBR_RS19910	0.28	-0.0
2,266,711	-		BBR_RS19910	0.28	-0.2
2,266,713	+		BBR_RS19910	0.28	-0.6
2,266,713	+		BBR_RS19910	0.28	-0.2
2,266,713	+		BBR_RS19910	0.28	-0.4
2,266,713	+		BBR_RS19910	0.28	-0.1
2,266,713	+		BBR_RS19910	0.28	-0.6
2,266,713	+		BBR_RS19910	0.28	-0.7
2,266,713	+		BBR_RS19910	0.28	+0.7
2,266,713	+		BBR_RS19910	0.28	+0.1
2,266,713	+		BBR_RS19910	0.28	+0.6
2,266,713	+		BBR_RS19910	0.28	+0.4
2,266,713	+		BBR_RS19910	0.28	-0.5
2,266,713	+		BBR_RS19910	0.28	+2.3
2,266,713	+		BBR_RS19910	0.28	+0.2
2,266,713	+		BBR_RS19910	0.28	+1.7
2,266,713	+		BBR_RS19910	0.28	-0.6
2,266,713	+		BBR_RS19910	0.28	-0.8
2,266,713	+		BBR_RS19910	0.28	-0.4
2,266,713	+		BBR_RS19910	0.28	-0.3
2,266,713	+		BBR_RS19910	0.28	+0.7
2,266,713	+		BBR_RS19910	0.28	+0.9
2,266,713	+		BBR_RS19910	0.28	+0.0
2,266,713	+		BBR_RS19910	0.28	+0.2
2,266,713	+		BBR_RS19910	0.28	+1.0
2,266,719	-		BBR_RS19910	0.29	+0.0
2,266,721	-		BBR_RS19910	0.30	+0.8
2,266,721	-		BBR_RS19910	0.30	+1.5
2,266,721	-		BBR_RS19910	0.30	-0.1
2,266,721	-		BBR_RS19910	0.30	+0.2
2,266,721	-		BBR_RS19910	0.30	+0.4
2,266,721	-		BBR_RS19910	0.30	+1.4
2,266,721	-		BBR_RS19910	0.30	+0.9
2,266,721	-		BBR_RS19910	0.30	+0.5
2,266,721	-		BBR_RS19910	0.30	+0.9
2,266,721	-		BBR_RS19910	0.30	+0.3
2,266,721	-		BBR_RS19910	0.30	+1.0
2,266,721	-		BBR_RS19910	0.30	-0.7
2,266,721	-		BBR_RS19910	0.30	-0.4
2,266,721	-		BBR_RS19910	0.30	-0.3
2,266,721	-		BBR_RS19910	0.30	+0.6
2,266,721	-		BBR_RS19910	0.30	-1.3
2,266,721	-		BBR_RS19910	0.30	-0.2
2,266,721	-		BBR_RS19910	0.30	-2.1
2,266,721	-		BBR_RS19910	0.30	-0.1
2,266,721	-		BBR_RS19910	0.30	+0.2
2,266,721	-		BBR_RS19910	0.30	+0.3
2,266,721	-		BBR_RS19910	0.30	-0.2
2,266,721	-		BBR_RS19910	0.30	-0.4
2,266,736	+		BBR_RS19910	0.32	+0.2
2,266,741	+		BBR_RS19910	0.33	-0.8
2,266,744	-		BBR_RS19910	0.33	+0.2
2,266,744	-		BBR_RS19910	0.33	+0.2
2,266,751	+		BBR_RS19910	0.34	+0.2
2,266,751	+		BBR_RS19910	0.34	+0.8
2,266,751	+		BBR_RS19910	0.34	-0.1
2,266,751	+		BBR_RS19910	0.34	+0.6
2,266,751	+		BBR_RS19910	0.34	+0.3
2,266,751	+		BBR_RS19910	0.34	+0.5
2,266,751	+		BBR_RS19910	0.34	-0.8
2,266,759	-		BBR_RS19910	0.36	-0.1
2,266,759	-		BBR_RS19910	0.36	+0.3
2,266,759	-		BBR_RS19910	0.36	-1.2
2,266,766	-		BBR_RS19910	0.37	+0.4
2,266,766	-		BBR_RS19910	0.37	+1.0
2,266,766	-		BBR_RS19910	0.37	-0.9
2,266,771	-		BBR_RS19910	0.38	+1.1
2,266,786	+		BBR_RS19910	0.40	-1.6
2,266,794	-		BBR_RS19910	0.41	+0.2
2,266,794	-		BBR_RS19910	0.41	-0.6
2,266,795	-		BBR_RS19910	0.41	-1.3
2,266,827	-		BBR_RS19910	0.46	-1.3
2,266,827	-		BBR_RS19910	0.46	-0.2
2,266,829	+		BBR_RS19910	0.47	+0.2
2,266,880	+		BBR_RS19910	0.55	-0.6
2,266,880	+		BBR_RS19910	0.55	-0.1
2,266,909	+		BBR_RS19910	0.59	-0.3
2,266,917	-		BBR_RS19910	0.61	-1.3
2,266,917	-		BBR_RS19910	0.61	+0.6
2,266,932	-		BBR_RS19910	0.63	+0.5
2,266,933	+		BBR_RS19910	0.63	+0.3
2,266,941	-		BBR_RS19910	0.64	-0.2
2,266,944	-		BBR_RS19910	0.65	+0.7
2,266,946	+		BBR_RS19910	0.65	+0.9
2,266,946	+		BBR_RS19910	0.65	-1.4
2,266,953	+		BBR_RS19910	0.66	+0.6
2,266,953	+		BBR_RS19910	0.66	+0.1
2,266,954	-		BBR_RS19910	0.67	-0.2
2,266,954	-		BBR_RS19910	0.67	+1.6
2,266,954	-		BBR_RS19910	0.67	+0.4
2,266,961	-		BBR_RS19910	0.68	-0.5
2,266,979	-		BBR_RS19910	0.70	-0.3
2,266,991	-		BBR_RS19910	0.72	+1.6
2,266,992	-		BBR_RS19910	0.73	-0.7
2,267,038	+		BBR_RS19910	0.80	-0.2
2,267,091	+		BBR_RS19910	0.88	+1.7
2,267,130	-				+0.6
2,267,135	+				-0.9
2,267,144	+				-0.1
2,267,146	+				-0.1
2,267,146	+				+0.2
2,267,153	-				+0.5
2,267,226	+		BBR_RS21135	0.20	-1.3
2,267,247	+		BBR_RS21135	0.26	+0.3
2,267,247	+		BBR_RS21135	0.26	+0.6
2,267,247	+		BBR_RS21135	0.26	-0.5
2,267,247	+		BBR_RS21135	0.26	+0.0
2,267,247	+		BBR_RS21135	0.26	-0.4
2,267,255	-		BBR_RS21135	0.28	+0.2
2,267,255	-		BBR_RS21135	0.28	-0.7
2,267,255	-		BBR_RS21135	0.28	-0.8
2,267,255	-		BBR_RS21135	0.28	+0.5
2,267,255	-		BBR_RS21135	0.28	+1.6
2,267,264	+		BBR_RS21135	0.31	+0.7
2,267,309	-		BBR_RS21135	0.44	+1.3
2,267,312	+		BBR_RS21135	0.45	+1.1
2,267,313	-		BBR_RS21135	0.45	+0.0
2,267,320	-		BBR_RS21135	0.47	+0.7
2,267,320	-		BBR_RS21135	0.47	-0.4
2,267,320	-		BBR_RS21135	0.47	-0.1
2,267,388	+		BBR_RS21135	0.67	-0.2
2,267,448	+		BBR_RS21135	0.84	+0.8
2,267,448	+		BBR_RS21135	0.84	-1.2
2,267,448	+		BBR_RS21135	0.84	+0.2
2,267,453	+		BBR_RS21135	0.85	-0.3
2,267,455	+		BBR_RS21135	0.86	-0.2
2,267,456	-		BBR_RS21135	0.86	+0.7
2,267,456	-		BBR_RS21135	0.86	+2.1
2,267,456	-		BBR_RS21135	0.86	-0.7
2,267,461	-		BBR_RS21135	0.88	-1.1
2,267,461	-		BBR_RS21135	0.88	+0.2
2,267,461	-		BBR_RS21135	0.88	+0.1
2,267,474	+				+1.1
2,267,478	-				-1.2
2,267,482	-				+0.1
2,267,498	+				-1.7
2,267,517	+				+0.2
2,267,522	-				-1.4
2,267,523	-				-1.3
2,267,561	+				-1.9
2,267,561	+				-0.3
2,267,561	-				+0.9
2,267,619	+				-1.2
2,267,620	+				-0.8
2,267,621	+				-1.0
2,267,622	-				+0.3
2,267,627	-				+0.6
2,267,627	-				-0.3
2,267,635	+				+0.5
2,267,636	-				+1.1
2,267,697	+				-0.7
2,267,697	+				-3.3
2,267,721	+				-0.5
2,267,733	+		BBR_RS19915	0.11	-0.5
2,267,740	+		BBR_RS19915	0.11	-1.6
2,267,752	+		BBR_RS19915	0.13	-1.5
2,267,761	-		BBR_RS19915	0.14	-0.2
2,267,768	+		BBR_RS19915	0.14	-2.1
2,267,776	-		BBR_RS19915	0.15	+0.1
2,267,776	-		BBR_RS19915	0.15	-0.8
2,267,785	+		BBR_RS19915	0.16	-1.1
2,267,791	-		BBR_RS19915	0.16	-0.9
2,267,814	+		BBR_RS19915	0.19	-1.4
2,267,836	+		BBR_RS19915	0.21	-1.8
2,267,844	-		BBR_RS19915	0.22	-2.8
2,267,882	-		BBR_RS19915	0.25	-1.3
2,267,887	-		BBR_RS19915	0.26	-1.3
2,267,911	-		BBR_RS19915	0.28	-0.1
2,267,931	+		BBR_RS19915	0.30	-0.1
2,267,931	+		BBR_RS19915	0.30	-2.6
2,267,931	+		BBR_RS19915	0.30	+0.2
2,267,931	+		BBR_RS19915	0.30	-1.9
2,267,931	+		BBR_RS19915	0.30	-2.4
2,267,939	-		BBR_RS19915	0.31	-0.7
2,267,996	+		BBR_RS19915	0.37	-0.1
2,268,001	+		BBR_RS19915	0.37	-2.2
2,268,004	-		BBR_RS19915	0.37	-1.6
2,268,004	-		BBR_RS19915	0.37	+0.2
2,268,029	-		BBR_RS19915	0.40	-1.8
2,268,029	-		BBR_RS19915	0.40	-1.2
2,268,048	-		BBR_RS19915	0.42	-0.1
2,268,066	-		BBR_RS19915	0.43	-0.6
2,268,068	+		BBR_RS19915	0.44	+0.4
2,268,068	+		BBR_RS19915	0.44	-1.6
2,268,101	+		BBR_RS19915	0.47	-0.2
2,268,101	+		BBR_RS19915	0.47	-1.0
2,268,131	-		BBR_RS19915	0.50	-0.9
2,268,132	+		BBR_RS19915	0.50	-0.9
2,268,132	+		BBR_RS19915	0.50	-2.2
2,268,153	-		BBR_RS19915	0.52	-2.9
2,268,153	-		BBR_RS19915	0.52	+0.7
2,268,155	-		BBR_RS19915	0.52	-1.2
2,268,155	-		BBR_RS19915	0.52	-2.8
2,268,157	+		BBR_RS19915	0.52	-2.0
2,268,157	+		BBR_RS19915	0.52	-0.7
2,268,167	-		BBR_RS19915	0.53	-0.4
2,268,167	-		BBR_RS19915	0.53	-0.3
2,268,172	+		BBR_RS19915	0.54	-1.1
2,268,172	+		BBR_RS19915	0.54	-0.8
2,268,180	-		BBR_RS19915	0.55	-1.1
2,268,211	+		BBR_RS19915	0.58	-1.4
2,268,216	+		BBR_RS19915	0.58	-1.5
2,268,216	+		BBR_RS19915	0.58	-1.9
2,268,216	+		BBR_RS19915	0.58	+0.8
2,268,219	-		BBR_RS19915	0.58	-1.3
2,268,224	-		BBR_RS19915	0.59	+0.0
2,268,224	-		BBR_RS19915	0.59	+0.9
2,268,224	-		BBR_RS19915	0.59	-1.3
2,268,229	-		BBR_RS19915	0.59	+0.2
2,268,243	-		BBR_RS19915	0.61	-3.1
2,268,274	+		BBR_RS19915	0.64	-0.9
2,268,275	+		BBR_RS19915	0.64	-2.2
2,268,282	-		BBR_RS19915	0.65	-0.7
2,268,292	-		BBR_RS19915	0.66	-1.4
2,268,310	-		BBR_RS19915	0.67	-0.4
2,268,315	-		BBR_RS19915	0.68	-1.2
2,268,321	+		BBR_RS19915	0.68	-2.3
2,268,329	-		BBR_RS19915	0.69	-1.4
2,268,351	+		BBR_RS19915	0.71	-1.7
2,268,383	-		BBR_RS19915	0.75	-1.1
2,268,392	-		BBR_RS19915	0.75	-0.2
2,268,392	-		BBR_RS19915	0.75	-2.3
2,268,392	-		BBR_RS19915	0.75	-1.3
2,268,404	-		BBR_RS19915	0.77	-0.4
2,268,452	+		BBR_RS19915	0.81	-2.0
2,268,473	-		BBR_RS19915	0.83	-0.0
2,268,481	+		BBR_RS19915	0.84	-1.8
2,268,481	+		BBR_RS19915	0.84	-0.1
2,268,483	+		BBR_RS19915	0.84	-2.1
2,268,486	+		BBR_RS19915	0.85	-2.4
2,268,489	-		BBR_RS19915	0.85	-0.3
2,268,489	-		BBR_RS19915	0.85	-1.3
2,268,513	-		BBR_RS19915	0.87	-0.4
2,268,556	-				-0.4
2,268,562	-				-1.1
2,268,576	-				-1.1
2,268,591	-				+0.2
2,268,600	+				-0.7
2,268,603	-				+0.5
2,268,603	-				+0.8
2,268,605	+				-1.2
2,268,605	+				-1.4
2,268,605	+				-0.7
2,268,605	+				+0.1
2,268,608	-				+0.1
2,268,608	-				-0.0
2,268,608	-				-2.6
2,268,613	-				-0.6
2,268,627	+				-0.4
2,268,635	-				+1.2
2,268,638	+				+0.6
2,268,650	+				-0.1
2,268,650	+				+0.6
2,268,650	+				-0.9
2,268,681	+				-0.0
2,268,684	-				+0.2
2,268,686	+				+0.2
2,268,701	-				+0.5
2,268,701	-				+0.2
2,268,701	-				+0.3
2,268,701	-				-0.0
2,268,701	-				+0.7
2,268,709	-				+0.5
2,268,723	-				+1.2
2,268,755	+				-0.6
2,268,826	-				-0.4
2,268,826	-				-1.2
2,268,826	-				+0.3
2,268,840	-				+0.4
2,268,840	-				+1.1
2,268,840	-				-1.0
2,268,850	+				-1.5
2,268,853	-				+0.2
2,268,853	-				-0.3
2,268,859	-				-0.8
2,268,866	-				-1.1
2,268,879	+				-0.6
2,268,889	+				-0.8
2,268,889	+				-0.8
2,268,889	+				+0.4
2,268,894	+				+0.6
2,268,900	+				-0.6
2,268,900	+				+0.4
2,268,902	-				-0.0
2,268,902	-				+0.4
2,268,926	-				+0.3
2,268,926	-				+0.1
2,268,926	-				-0.0
2,268,984	-				-1.5
2,268,990	+				-1.5
2,268,990	+				-0.7
2,269,075	-				+1.3
2,269,075	-				-1.0
2,269,118	+				-0.1
2,269,182	+				-0.9
2,269,182	+				-3.4
2,269,190	-				-0.0
2,269,190	-				+0.7
2,269,194	+				-0.1
2,269,194	+				-0.7
2,269,194	+				-2.4
2,269,194	+				-0.3
2,269,194	+				-0.7
2,269,194	+				-0.2
2,269,194	+				-3.2
2,269,194	+				-1.3
2,269,194	+				-0.1
2,269,194	+				-0.7
2,269,194	+				-2.9
2,269,194	+				-0.4
2,269,200	-				+0.4
2,269,201	+				-0.7
2,269,202	-				-2.2
2,269,202	-				-0.4
2,269,202	-				+0.3
2,269,204	+				-1.7
2,269,204	-				+1.1
2,269,207	-				+0.8
2,269,218	+				-0.7
2,269,232	-				+0.2
2,269,274	+				+0.4
2,269,282	-				+1.1
2,269,283	+				+0.4
2,269,288	+				-0.9
2,269,291	-				+0.3
2,269,293	+				-0.9
2,269,296	-				-0.2
2,269,301	-				+0.4
2,269,302	-				-1.5
2,269,306	-				+0.4
2,269,315	-				+0.8
2,269,317	+				+0.0
2,269,326	-				+1.1
2,269,333	+				-2.2
2,269,333	+				-0.5
2,269,363	+				+0.9
2,269,366	+				-0.5
2,269,371	+				-0.5
2,269,373	+				+0.4
2,269,374	-				-1.0
2,269,376	-				+0.6
2,269,376	-				-0.5
2,269,378	+				-1.6
2,269,379	-				+0.8
2,269,386	-				+0.5
2,269,386	-				+0.4
2,269,398	+				-2.4
2,269,411	-				-0.8
2,269,422	+				-1.1
2,269,428	+				-0.2
2,269,438	+				-2.0
2,269,438	+				-0.8
2,269,438	+				-0.5
2,269,444	-		BBR_RS19925	0.10	+0.5
2,269,444	-		BBR_RS19925	0.10	-0.4
2,269,454	-		BBR_RS19925	0.11	-1.7
2,269,454	-		BBR_RS19925	0.11	-1.0
2,269,456	+		BBR_RS19925	0.11	-1.9
2,269,464	-		BBR_RS19925	0.12	-0.2
2,269,464	-		BBR_RS19925	0.12	-0.7
2,269,464	-		BBR_RS19925	0.12	-1.5
2,269,495	+		BBR_RS19925	0.14	-0.8
2,269,495	+		BBR_RS19925	0.14	+0.3
2,269,500	+		BBR_RS19925	0.14	-0.9
2,269,503	-		BBR_RS19925	0.15	+1.3
2,269,503	-		BBR_RS19925	0.15	+0.4
2,269,503	-		BBR_RS19925	0.15	+0.4
2,269,503	-		BBR_RS19925	0.15	+0.8
2,269,508	-		BBR_RS19925	0.15	-0.2
2,269,514	-		BBR_RS19925	0.15	+0.2
2,269,515	+		BBR_RS19925	0.15	-1.0
2,269,515	+		BBR_RS19925	0.15	-1.4
2,269,523	-		BBR_RS19925	0.16	-2.2
2,269,534	+		BBR_RS19925	0.17	-0.9
2,269,534	+		BBR_RS19925	0.17	-1.1
2,269,547	-		BBR_RS19925	0.18	+0.8
2,269,547	-		BBR_RS19925	0.18	+0.5
2,269,590	+		BBR_RS19925	0.21	-2.3
2,269,607	+		BBR_RS19925	0.22	+0.5
2,269,612	+		BBR_RS19925	0.22	-1.4
2,269,624	+		BBR_RS19925	0.23	-0.5
2,269,624	-		BBR_RS19925	0.23	+1.2
2,269,626	-		BBR_RS19925	0.23	-0.2
2,269,631	-		BBR_RS19925	0.24	+1.1
2,269,632	-		BBR_RS19925	0.24	+0.4
2,269,632	-		BBR_RS19925	0.24	-0.0
2,269,632	-		BBR_RS19925	0.24	+0.6
2,269,632	-		BBR_RS19925	0.24	-1.3
2,269,636	+		BBR_RS19925	0.24	-0.4
2,269,640	+		BBR_RS19925	0.24	-0.4