Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12775

Experiment: CDM1 without Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12760 and BBR_RS12770 are separated by 70 nucleotidesBBR_RS12770 and BBR_RS12775 are separated by 469 nucleotidesBBR_RS12775 and BBR_RS12780 are separated by 0 nucleotidesBBR_RS12780 and BBR_RS12785 are separated by 63 nucleotides BBR_RS12760: BBR_RS12760 - hypothetical protein, at 615,670 to 616,906 _RS12760 BBR_RS12770: BBR_RS12770 - hypothetical protein, at 616,977 to 617,183 _RS12770 BBR_RS12775: BBR_RS12775 - hypothetical protein, at 617,653 to 618,066 _RS12775 BBR_RS12780: BBR_RS12780 - hypothetical protein, at 618,067 to 618,603 _RS12780 BBR_RS12785: BBR_RS12785 - transcriptional regulator, at 618,667 to 619,161 _RS12785 Position (kb) 617 618 619Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 616.689 kb on + strand, within BBR_RS12760at 616.706 kb on - strand, within BBR_RS12760at 616.721 kb on - strand, within BBR_RS12760at 616.779 kb on - strand, within BBR_RS12760at 616.799 kb on + strandat 616.799 kb on + strandat 616.799 kb on + strandat 616.807 kb on - strandat 616.807 kb on - strandat 616.814 kb on - strandat 616.814 kb on - strandat 616.825 kb on - strandat 616.845 kb on - strandat 616.871 kb on + strandat 616.879 kb on - strandat 616.887 kb on + strandat 616.891 kb on - strandat 616.899 kb on - strandat 617.039 kb on + strand, within BBR_RS12770at 617.053 kb on + strand, within BBR_RS12770at 617.067 kb on + strand, within BBR_RS12770at 617.085 kb on + strand, within BBR_RS12770at 617.093 kb on - strand, within BBR_RS12770at 617.103 kb on - strand, within BBR_RS12770at 617.143 kb on - strand, within BBR_RS12770at 617.177 kb on + strandat 617.215 kb on - strandat 617.215 kb on - strandat 617.221 kb on - strandat 617.261 kb on + strandat 617.263 kb on + strandat 617.294 kb on - strandat 617.343 kb on + strandat 617.345 kb on + strandat 617.345 kb on + strandat 617.345 kb on + strandat 617.351 kb on - strandat 617.353 kb on + strandat 617.353 kb on + strandat 617.415 kb on + strandat 617.439 kb on + strandat 617.454 kb on - strandat 617.462 kb on - strandat 617.529 kb on + strandat 617.555 kb on - strandat 617.560 kb on + strandat 617.601 kb on - strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.672 kb on + strandat 617.680 kb on - strandat 617.735 kb on + strand, within BBR_RS12775at 617.803 kb on - strand, within BBR_RS12775at 617.863 kb on + strand, within BBR_RS12775at 617.865 kb on - strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.936 kb on + strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 618.019 kb on + strand, within BBR_RS12775at 618.021 kb on + strand, within BBR_RS12775at 618.038 kb on + strandat 618.055 kb on + strandat 618.110 kb on - strandat 618.115 kb on - strandat 618.157 kb on - strand, within BBR_RS12780at 618.169 kb on - strand, within BBR_RS12780at 618.264 kb on + strand, within BBR_RS12780at 618.317 kb on + strand, within BBR_RS12780at 618.317 kb on + strand, within BBR_RS12780at 618.333 kb on - strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.343 kb on - strand, within BBR_RS12780at 618.408 kb on + strand, within BBR_RS12780at 618.408 kb on + strand, within BBR_RS12780at 618.434 kb on + strand, within BBR_RS12780at 618.449 kb on + strand, within BBR_RS12780at 618.481 kb on + strand, within BBR_RS12780at 618.588 kb on + strandat 618.593 kb on + strandat 618.657 kb on + strandat 618.657 kb on + strandat 618.665 kb on - strandat 618.763 kb on + strand, within BBR_RS12785at 618.947 kb on + strand, within BBR_RS12785

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Arginine
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616,689 + BBR_RS12760 0.82 -2.6
616,706 - BBR_RS12760 0.84 -4.4
616,721 - BBR_RS12760 0.85 -1.6
616,779 - BBR_RS12760 0.90 -2.5
616,799 + -0.0
616,799 + -0.6
616,799 + -1.6
616,807 - -3.9
616,807 - -2.7
616,814 - -2.1
616,814 - -2.0
616,825 - -1.7
616,845 - -1.3
616,871 + -1.6
616,879 - -3.4
616,887 + -1.9
616,891 - -1.1
616,899 - -1.5
617,039 + BBR_RS12770 0.30 -1.0
617,053 + BBR_RS12770 0.37 -2.6
617,067 + BBR_RS12770 0.43 -2.8
617,085 + BBR_RS12770 0.52 -0.2
617,093 - BBR_RS12770 0.56 -1.0
617,103 - BBR_RS12770 0.61 -1.4
617,143 - BBR_RS12770 0.80 -0.8
617,177 + -2.1
617,215 - -0.9
617,215 - -3.2
617,221 - -0.2
617,261 + -2.0
617,263 + -0.7
617,294 - -0.9
617,343 + -1.2
617,345 + -1.1
617,345 + +0.2
617,345 + +0.0
617,351 - -1.5
617,353 + -1.9
617,353 + -0.7
617,415 + -0.5
617,439 + -2.1
617,454 - -0.8
617,462 - +0.3
617,529 + -1.4
617,555 - -1.7
617,560 + -0.2
617,601 - -3.5
617,627 + +0.1
617,627 + -2.2
617,627 + -1.5
617,627 + -0.7
617,627 + -1.0
617,672 + -2.5
617,680 - +0.8
617,735 + BBR_RS12775 0.20 -2.4
617,803 - BBR_RS12775 0.36 -4.2
617,863 + BBR_RS12775 0.51 -0.6
617,865 - BBR_RS12775 0.51 -2.4
617,928 + BBR_RS12775 0.66 -1.1
617,928 + BBR_RS12775 0.66 -1.2
617,928 + BBR_RS12775 0.66 -0.1
617,928 + BBR_RS12775 0.66 -1.0
617,928 + BBR_RS12775 0.66 -0.7
617,936 + BBR_RS12775 0.68 -1.5
617,936 - BBR_RS12775 0.68 +1.1
617,936 - BBR_RS12775 0.68 -2.8
617,936 - BBR_RS12775 0.68 -2.7
618,019 + BBR_RS12775 0.88 -1.3
618,021 + BBR_RS12775 0.89 -2.0
618,038 + -3.3
618,055 + -0.9
618,110 - -1.9
618,115 - -2.8
618,157 - BBR_RS12780 0.17 -0.7
618,169 - BBR_RS12780 0.19 -3.1
618,264 + BBR_RS12780 0.37 -0.2
618,317 + BBR_RS12780 0.47 -1.6
618,317 + BBR_RS12780 0.47 -0.9
618,333 - BBR_RS12780 0.50 -1.3
618,335 + BBR_RS12780 0.50 -1.1
618,335 + BBR_RS12780 0.50 -0.5
618,335 + BBR_RS12780 0.50 -1.1
618,343 - BBR_RS12780 0.51 -3.4
618,408 + BBR_RS12780 0.64 -0.4
618,408 + BBR_RS12780 0.64 -0.0
618,434 + BBR_RS12780 0.68 -0.5
618,449 + BBR_RS12780 0.71 -0.2
618,481 + BBR_RS12780 0.77 -1.5
618,588 + +0.9
618,593 + -1.2
618,657 + +0.2
618,657 + -0.4
618,665 - -0.2
618,763 + BBR_RS12785 0.19 -0.9
618,947 + BBR_RS12785 0.57 +0.0

Or see this region's nucleotide sequence