Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4726

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4724 and Ac3H11_4725 overlap by 14 nucleotidesAc3H11_4725 and Ac3H11_4726 are separated by 44 nucleotidesAc3H11_4726 and Ac3H11_4727 are separated by 60 nucleotidesAc3H11_4727 and Ac3H11_4728 are separated by 14 nucleotidesAc3H11_4728 and Ac3H11_4729 overlap by 4 nucleotides Ac3H11_4724 - Histidinol dehydrogenase (EC 1.1.1.23), at 33,255 to 34,637 _4724 Ac3H11_4725 - hypothetical protein, at 34,624 to 35,046 _4725 Ac3H11_4726 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 35,091 to 36,647 _4726 Ac3H11_4727 - FIG00347535: hypothetical protein, at 36,708 to 36,932 _4727 Ac3H11_4728 - FIG00349391: hypothetical protein, at 36,947 to 37,399 _4728 Ac3H11_4729 - histidinol-phosphate transaminase (EC 2.6.1.9) (from data), at 37,396 to 38,520 _4729 Position (kb) 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 34.845 kb on - strand, within Ac3H11_4725at 35.122 kb on + strandat 35.123 kb on - strandat 35.123 kb on - strandat 35.123 kb on - strandat 35.135 kb on + strandat 35.135 kb on + strandat 35.136 kb on - strandat 35.136 kb on - strandat 35.140 kb on + strandat 35.140 kb on + strandat 35.140 kb on + strandat 35.141 kb on - strandat 35.141 kb on - strandat 35.160 kb on + strandat 35.161 kb on - strandat 35.167 kb on + strandat 35.167 kb on + strandat 35.168 kb on - strandat 35.226 kb on + strandat 35.226 kb on + strandat 35.226 kb on + strandat 35.227 kb on - strandat 35.355 kb on + strand, within Ac3H11_4726at 35.355 kb on + strand, within Ac3H11_4726at 35.355 kb on + strand, within Ac3H11_4726at 35.355 kb on + strand, within Ac3H11_4726at 35.356 kb on - strand, within Ac3H11_4726at 35.356 kb on - strand, within Ac3H11_4726at 35.356 kb on - strand, within Ac3H11_4726at 35.640 kb on + strand, within Ac3H11_4726at 35.640 kb on + strand, within Ac3H11_4726at 35.640 kb on + strand, within Ac3H11_4726at 35.640 kb on + strand, within Ac3H11_4726at 35.640 kb on + strand, within Ac3H11_4726at 35.641 kb on - strand, within Ac3H11_4726at 35.641 kb on - strand, within Ac3H11_4726at 35.641 kb on - strand, within Ac3H11_4726at 35.641 kb on - strand, within Ac3H11_4726at 35.641 kb on - strand, within Ac3H11_4726at 35.688 kb on + strand, within Ac3H11_4726at 35.688 kb on + strand, within Ac3H11_4726at 35.689 kb on - strand, within Ac3H11_4726at 36.063 kb on + strand, within Ac3H11_4726at 36.063 kb on + strand, within Ac3H11_4726at 36.063 kb on + strand, within Ac3H11_4726at 36.063 kb on + strand, within Ac3H11_4726at 36.063 kb on + strand, within Ac3H11_4726at 36.064 kb on - strand, within Ac3H11_4726at 36.064 kb on - strand, within Ac3H11_4726at 36.064 kb on - strand, within Ac3H11_4726at 36.064 kb on - strand, within Ac3H11_4726at 36.064 kb on - strand, within Ac3H11_4726at 36.064 kb on - strand, within Ac3H11_4726at 36.064 kb on - strand, within Ac3H11_4726at 36.111 kb on + strand, within Ac3H11_4726at 36.112 kb on - strand, within Ac3H11_4726at 36.112 kb on - strand, within Ac3H11_4726at 36.840 kb on + strand, within Ac3H11_4727at 36.840 kb on + strand, within Ac3H11_4727at 36.840 kb on + strand, within Ac3H11_4727at 36.841 kb on - strand, within Ac3H11_4727at 36.841 kb on - strand, within Ac3H11_4727at 36.841 kb on - strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.900 kb on + strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 36.901 kb on - strand, within Ac3H11_4727at 37.100 kb on + strand, within Ac3H11_4728at 37.100 kb on + strand, within Ac3H11_4728at 37.100 kb on + strand, within Ac3H11_4728at 37.100 kb on + strand, within Ac3H11_4728at 37.100 kb on + strand, within Ac3H11_4728at 37.100 kb on + strand, within Ac3H11_4728at 37.100 kb on + strand, within Ac3H11_4728at 37.100 kb on + strand, within Ac3H11_4728at 37.100 kb on + strand, within Ac3H11_4728at 37.100 kb on + strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.101 kb on - strand, within Ac3H11_4728at 37.137 kb on + strand, within Ac3H11_4728at 37.137 kb on + strand, within Ac3H11_4728at 37.138 kb on - strand, within Ac3H11_4728at 37.138 kb on - strand, within Ac3H11_4728at 37.138 kb on - strand, within Ac3H11_4728at 37.202 kb on + strand, within Ac3H11_4728at 37.202 kb on + strand, within Ac3H11_4728at 37.202 kb on + strand, within Ac3H11_4728at 37.203 kb on - strand, within Ac3H11_4728at 37.203 kb on - strand, within Ac3H11_4728at 37.209 kb on + strand, within Ac3H11_4728at 37.210 kb on - strand, within Ac3H11_4728at 37.210 kb on - strand, within Ac3H11_4728at 37.210 kb on - strand, within Ac3H11_4728at 37.210 kb on - strand, within Ac3H11_4728at 37.251 kb on - strand, within Ac3H11_4728at 37.251 kb on - strand, within Ac3H11_4728at 37.298 kb on + strand, within Ac3H11_4728

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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34,845 - Ac3H11_4725 0.52 +0.2
35,122 + -1.5
35,123 - -0.2
35,123 - +0.4
35,123 - -0.4
35,135 + +0.6
35,135 + +0.4
35,136 - -0.9
35,136 - +0.2
35,140 + -0.2
35,140 + +0.4
35,140 + -1.0
35,141 - +0.4
35,141 - -2.8
35,160 + +0.2
35,161 - -0.2
35,167 + +0.3
35,167 + -0.2
35,168 - +0.3
35,226 + -2.1
35,226 + +0.6
35,226 + -0.2
35,227 - -0.1
35,355 + Ac3H11_4726 0.17 +1.2
35,355 + Ac3H11_4726 0.17 -0.7
35,355 + Ac3H11_4726 0.17 +0.4
35,355 + Ac3H11_4726 0.17 +0.4
35,356 - Ac3H11_4726 0.17 -0.5
35,356 - Ac3H11_4726 0.17 +1.0
35,356 - Ac3H11_4726 0.17 +0.7
35,640 + Ac3H11_4726 0.35 +1.2
35,640 + Ac3H11_4726 0.35 +1.0
35,640 + Ac3H11_4726 0.35 +0.4
35,640 + Ac3H11_4726 0.35 +0.1
35,640 + Ac3H11_4726 0.35 -2.7
35,641 - Ac3H11_4726 0.35 +0.5
35,641 - Ac3H11_4726 0.35 -0.9
35,641 - Ac3H11_4726 0.35 -0.5
35,641 - Ac3H11_4726 0.35 -0.4
35,641 - Ac3H11_4726 0.35 -0.0
35,688 + Ac3H11_4726 0.38 +0.1
35,688 + Ac3H11_4726 0.38 +0.2
35,689 - Ac3H11_4726 0.38 -0.4
36,063 + Ac3H11_4726 0.62 +0.0
36,063 + Ac3H11_4726 0.62 -0.2
36,063 + Ac3H11_4726 0.62 +0.3
36,063 + Ac3H11_4726 0.62 +0.6
36,063 + Ac3H11_4726 0.62 +0.4
36,064 - Ac3H11_4726 0.62 +0.4
36,064 - Ac3H11_4726 0.62 -1.8
36,064 - Ac3H11_4726 0.62 -1.4
36,064 - Ac3H11_4726 0.62 +0.2
36,064 - Ac3H11_4726 0.62 +0.7
36,064 - Ac3H11_4726 0.62 +0.4
36,064 - Ac3H11_4726 0.62 +0.6
36,111 + Ac3H11_4726 0.66 -0.5
36,112 - Ac3H11_4726 0.66 -0.4
36,112 - Ac3H11_4726 0.66 +0.3
36,840 + Ac3H11_4727 0.59 +0.1
36,840 + Ac3H11_4727 0.59 -0.4
36,840 + Ac3H11_4727 0.59 -0.5
36,841 - Ac3H11_4727 0.59 -1.7
36,841 - Ac3H11_4727 0.59 -1.6
36,841 - Ac3H11_4727 0.59 -0.1
36,900 + Ac3H11_4727 0.85 +0.3
36,900 + Ac3H11_4727 0.85 +0.1
36,900 + Ac3H11_4727 0.85 +0.5
36,900 + Ac3H11_4727 0.85 +0.1
36,900 + Ac3H11_4727 0.85 +0.5
36,900 + Ac3H11_4727 0.85 +0.1
36,900 + Ac3H11_4727 0.85 -0.6
36,900 + Ac3H11_4727 0.85 -2.5
36,900 + Ac3H11_4727 0.85 +0.2
36,900 + Ac3H11_4727 0.85 -0.4
36,900 + Ac3H11_4727 0.85 +0.8
36,900 + Ac3H11_4727 0.85 -0.2
36,900 + Ac3H11_4727 0.85 +0.3
36,900 + Ac3H11_4727 0.85 -0.7
36,900 + Ac3H11_4727 0.85 -0.1
36,901 - Ac3H11_4727 0.86 +0.1
36,901 - Ac3H11_4727 0.86 +0.4
36,901 - Ac3H11_4727 0.86 -0.4
36,901 - Ac3H11_4727 0.86 -2.2
36,901 - Ac3H11_4727 0.86 +0.1
36,901 - Ac3H11_4727 0.86 +0.4
36,901 - Ac3H11_4727 0.86 +0.6
36,901 - Ac3H11_4727 0.86 -0.9
36,901 - Ac3H11_4727 0.86 -0.8
36,901 - Ac3H11_4727 0.86 +0.1
36,901 - Ac3H11_4727 0.86 -0.4
36,901 - Ac3H11_4727 0.86 -0.2
36,901 - Ac3H11_4727 0.86 -0.3
36,901 - Ac3H11_4727 0.86 -0.1
36,901 - Ac3H11_4727 0.86 -0.4
37,100 + Ac3H11_4728 0.34 +0.6
37,100 + Ac3H11_4728 0.34 -0.4
37,100 + Ac3H11_4728 0.34 -3.6
37,100 + Ac3H11_4728 0.34 -0.2
37,100 + Ac3H11_4728 0.34 -0.5
37,100 + Ac3H11_4728 0.34 +0.3
37,100 + Ac3H11_4728 0.34 +0.7
37,100 + Ac3H11_4728 0.34 +0.3
37,100 + Ac3H11_4728 0.34 +1.9
37,100 + Ac3H11_4728 0.34 -0.3
37,101 - Ac3H11_4728 0.34 -1.4
37,101 - Ac3H11_4728 0.34 -1.6
37,101 - Ac3H11_4728 0.34 +0.8
37,101 - Ac3H11_4728 0.34 -2.5
37,101 - Ac3H11_4728 0.34 -0.1
37,101 - Ac3H11_4728 0.34 -2.2
37,101 - Ac3H11_4728 0.34 -2.4
37,101 - Ac3H11_4728 0.34 -1.5
37,101 - Ac3H11_4728 0.34 -0.9
37,101 - Ac3H11_4728 0.34 -3.2
37,101 - Ac3H11_4728 0.34 +0.2
37,101 - Ac3H11_4728 0.34 -2.6
37,137 + Ac3H11_4728 0.42 -1.0
37,137 + Ac3H11_4728 0.42 -0.4
37,138 - Ac3H11_4728 0.42 -1.4
37,138 - Ac3H11_4728 0.42 -0.4
37,138 - Ac3H11_4728 0.42 +1.6
37,202 + Ac3H11_4728 0.56 +1.8
37,202 + Ac3H11_4728 0.56 +0.1
37,202 + Ac3H11_4728 0.56 +2.0
37,203 - Ac3H11_4728 0.57 -0.8
37,203 - Ac3H11_4728 0.57 -1.1
37,209 + Ac3H11_4728 0.58 +0.2
37,210 - Ac3H11_4728 0.58 -1.0
37,210 - Ac3H11_4728 0.58 -0.6
37,210 - Ac3H11_4728 0.58 -0.0
37,210 - Ac3H11_4728 0.58 -1.1
37,251 - Ac3H11_4728 0.67 -0.8
37,251 - Ac3H11_4728 0.67 -1.7
37,298 + Ac3H11_4728 0.77 -0.1

Or see this region's nucleotide sequence