Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2002

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2001 and Ac3H11_2002 are separated by 180 nucleotidesAc3H11_2002 and Ac3H11_2003 are separated by 58 nucleotides Ac3H11_2001 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 217,448 to 218,509 _2001 Ac3H11_2002 - C4-type zinc finger protein, DksA/TraR family, at 218,690 to 219,517 _2002 Ac3H11_2003 - FIG00715336: hypothetical protein, at 219,576 to 221,330 _2003 Position (kb) 218 219 220Strain fitness (log2 ratio) -3 -2 -1 0 1at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 218.235 kb on - strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.301 kb on - strand, within Ac3H11_2001at 218.301 kb on - strand, within Ac3H11_2001at 218.321 kb on + strand, within Ac3H11_2001at 218.321 kb on + strand, within Ac3H11_2001at 218.322 kb on - strand, within Ac3H11_2001at 218.322 kb on - strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.335 kb on + strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.336 kb on - strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.338 kb on + strand, within Ac3H11_2001at 218.339 kb on - strand, within Ac3H11_2001at 218.339 kb on - strand, within Ac3H11_2001at 218.339 kb on - strand, within Ac3H11_2001at 218.339 kb on - strand, within Ac3H11_2001at 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.557 kb on + strandat 218.558 kb on - strandat 218.594 kb on + strandat 218.594 kb on + strandat 218.594 kb on + strandat 218.594 kb on + strandat 218.610 kb on + strandat 218.670 kb on + strandat 218.961 kb on + strand, within Ac3H11_2002at 219.008 kb on + strand, within Ac3H11_2002at 219.008 kb on + strand, within Ac3H11_2002at 219.008 kb on + strand, within Ac3H11_2002at 219.012 kb on + strand, within Ac3H11_2002at 219.012 kb on + strand, within Ac3H11_2002at 219.565 kb on + strandat 219.565 kb on + strandat 219.693 kb on + strandat 219.693 kb on + strandat 219.693 kb on + strandat 219.694 kb on - strandat 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.383 kb on + strand, within Ac3H11_2003at 220.444 kb on - strand, within Ac3H11_2003at 220.444 kb on - strand, within Ac3H11_2003at 220.444 kb on - strand, within Ac3H11_2003at 220.444 kb on - strand, within Ac3H11_2003

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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217,811 + Ac3H11_2001 0.34 -0.8
217,811 + Ac3H11_2001 0.34 -0.1
217,811 + Ac3H11_2001 0.34 -0.3
217,811 + Ac3H11_2001 0.34 -1.1
217,811 + Ac3H11_2001 0.34 -0.3
217,811 + Ac3H11_2001 0.34 -0.3
217,811 + Ac3H11_2001 0.34 +0.1
217,811 + Ac3H11_2001 0.34 -0.1
217,811 + Ac3H11_2001 0.34 +0.3
217,811 + Ac3H11_2001 0.34 -1.5
217,811 + Ac3H11_2001 0.34 -1.4
217,812 - Ac3H11_2001 0.34 -0.5
217,812 - Ac3H11_2001 0.34 -0.5
217,812 - Ac3H11_2001 0.34 +0.2
217,812 - Ac3H11_2001 0.34 -0.2
217,812 - Ac3H11_2001 0.34 -0.3
217,812 - Ac3H11_2001 0.34 +0.5
217,812 - Ac3H11_2001 0.34 +0.5
217,812 - Ac3H11_2001 0.34 +0.5
217,812 - Ac3H11_2001 0.34 -0.3
217,812 - Ac3H11_2001 0.34 +1.0
217,812 - Ac3H11_2001 0.34 +0.0
218,235 - Ac3H11_2001 0.74 -0.3
218,300 + Ac3H11_2001 0.80 -0.3
218,300 + Ac3H11_2001 0.80 +1.0
218,300 + Ac3H11_2001 0.80 -0.4
218,300 + Ac3H11_2001 0.80 -0.2
218,300 + Ac3H11_2001 0.80 +0.7
218,301 - Ac3H11_2001 0.80 +0.1
218,301 - Ac3H11_2001 0.80 -0.1
218,321 + Ac3H11_2001 0.82 -0.4
218,321 + Ac3H11_2001 0.82 +0.3
218,322 - Ac3H11_2001 0.82 +0.3
218,322 - Ac3H11_2001 0.82 +0.3
218,335 + Ac3H11_2001 0.84 -1.5
218,335 + Ac3H11_2001 0.84 +0.0
218,335 + Ac3H11_2001 0.84 -0.8
218,335 + Ac3H11_2001 0.84 -0.7
218,335 + Ac3H11_2001 0.84 -0.2
218,335 + Ac3H11_2001 0.84 +0.1
218,336 - Ac3H11_2001 0.84 -0.1
218,336 - Ac3H11_2001 0.84 -0.9
218,336 - Ac3H11_2001 0.84 +0.2
218,336 - Ac3H11_2001 0.84 -0.6
218,336 - Ac3H11_2001 0.84 +0.2
218,336 - Ac3H11_2001 0.84 +0.3
218,336 - Ac3H11_2001 0.84 -0.6
218,336 - Ac3H11_2001 0.84 -0.5
218,336 - Ac3H11_2001 0.84 +0.0
218,336 - Ac3H11_2001 0.84 +0.5
218,336 - Ac3H11_2001 0.84 -0.1
218,336 - Ac3H11_2001 0.84 +0.6
218,338 + Ac3H11_2001 0.84 -1.3
218,338 + Ac3H11_2001 0.84 -0.6
218,338 + Ac3H11_2001 0.84 -0.2
218,338 + Ac3H11_2001 0.84 +0.1
218,338 + Ac3H11_2001 0.84 -0.5
218,338 + Ac3H11_2001 0.84 +0.1
218,338 + Ac3H11_2001 0.84 -0.4
218,338 + Ac3H11_2001 0.84 -0.4
218,338 + Ac3H11_2001 0.84 +0.6
218,339 - Ac3H11_2001 0.84 +0.0
218,339 - Ac3H11_2001 0.84 +0.3
218,339 - Ac3H11_2001 0.84 +0.4
218,339 - Ac3H11_2001 0.84 -0.9
218,557 + +0.5
218,557 + -0.7
218,557 + -0.8
218,557 + -0.8
218,557 + +0.2
218,557 + -0.4
218,557 + +0.9
218,557 + +0.5
218,558 - -1.4
218,594 + +0.5
218,594 + -0.1
218,594 + +0.3
218,594 + -0.6
218,610 + -0.9
218,670 + -0.4
218,961 + Ac3H11_2002 0.33 -1.6
219,008 + Ac3H11_2002 0.38 -0.3
219,008 + Ac3H11_2002 0.38 -0.6
219,008 + Ac3H11_2002 0.38 -1.5
219,012 + Ac3H11_2002 0.39 -0.7
219,012 + Ac3H11_2002 0.39 -0.7
219,565 + +0.8
219,565 + -0.1
219,693 + +0.5
219,693 + +1.0
219,693 + -0.1
219,694 - -0.4
220,023 + Ac3H11_2003 0.25 -0.1
220,023 + Ac3H11_2003 0.25 -1.4
220,023 + Ac3H11_2003 0.25 +1.3
220,023 + Ac3H11_2003 0.25 +0.6
220,023 + Ac3H11_2003 0.25 +0.2
220,023 + Ac3H11_2003 0.25 +0.8
220,023 + Ac3H11_2003 0.25 +0.4
220,024 - Ac3H11_2003 0.26 -0.4
220,024 - Ac3H11_2003 0.26 +0.4
220,024 - Ac3H11_2003 0.26 +0.6
220,024 - Ac3H11_2003 0.26 -0.0
220,024 - Ac3H11_2003 0.26 -2.2
220,024 - Ac3H11_2003 0.26 +0.7
220,024 - Ac3H11_2003 0.26 +0.2
220,024 - Ac3H11_2003 0.26 +0.4
220,024 - Ac3H11_2003 0.26 +0.3
220,024 - Ac3H11_2003 0.26 -2.8
220,249 + Ac3H11_2003 0.38 -0.0
220,249 + Ac3H11_2003 0.38 -0.2
220,249 + Ac3H11_2003 0.38 +0.1
220,249 + Ac3H11_2003 0.38 +0.5
220,249 + Ac3H11_2003 0.38 +0.1
220,249 + Ac3H11_2003 0.38 -1.2
220,383 + Ac3H11_2003 0.46 +0.4
220,444 - Ac3H11_2003 0.49 +0.8
220,444 - Ac3H11_2003 0.49 +0.2
220,444 - Ac3H11_2003 0.49 +0.4
220,444 - Ac3H11_2003 0.49 -0.7

Or see this region's nucleotide sequence