Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20575

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS20570 and AZOBR_RS20575 overlap by 8 nucleotidesAZOBR_RS20575 and AZOBR_RS20580 are separated by 55 nucleotidesAZOBR_RS20580 and AZOBR_RS20585 are separated by 26 nucleotides AZOBR_RS20570: AZOBR_RS20570 - dihydroorotase, at 1,379,818 to 1,381,122 _RS20570 AZOBR_RS20575: AZOBR_RS20575 - aspartate carbamoyltransferase, at 1,381,115 to 1,382,077 _RS20575 AZOBR_RS20580: AZOBR_RS20580 - membrane protein, at 1,382,133 to 1,382,639 _RS20580 AZOBR_RS20585: AZOBR_RS20585 - hypothetical protein, at 1,382,666 to 1,383,022 _RS20585 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -2 -1 0 1at 1381.330 kb on - strand, within AZOBR_RS20575at 1381.336 kb on - strand, within AZOBR_RS20575at 1381.336 kb on - strand, within AZOBR_RS20575at 1381.336 kb on - strand, within AZOBR_RS20575at 1381.357 kb on - strand, within AZOBR_RS20575at 1382.089 kb on - strandat 1382.091 kb on - strandat 1382.091 kb on - strandat 1382.091 kb on - strandat 1382.091 kb on - strandat 1382.091 kb on - strandat 1382.935 kb on - strand, within AZOBR_RS20585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
1,381,330 - AZOBR_RS20575 0.22 -1.3
1,381,336 - AZOBR_RS20575 0.23 -1.1
1,381,336 - AZOBR_RS20575 0.23 +0.9
1,381,336 - AZOBR_RS20575 0.23 -0.7
1,381,357 - AZOBR_RS20575 0.25 -2.3
1,382,089 - -1.3
1,382,091 - +0.9
1,382,091 - -0.8
1,382,091 - +0.0
1,382,091 - -0.3
1,382,091 - -1.1
1,382,935 - AZOBR_RS20585 0.75 -0.3

Or see this region's nucleotide sequence