Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10265

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS10260 and AZOBR_RS10265 are separated by 277 nucleotidesAZOBR_RS10265 and AZOBR_RS10270 are separated by 3 nucleotides AZOBR_RS10260: AZOBR_RS10260 - hypothetical protein, at 2,144,512 to 2,147,739 _RS10260 AZOBR_RS10265: AZOBR_RS10265 - amino acid ABC transporter substrate-binding protein, at 2,148,017 to 2,148,856 _RS10265 AZOBR_RS10270: AZOBR_RS10270 - potassium transport protein Kup, at 2,148,860 to 2,150,704 _RS10270 Position (kb) 2148 2149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2147.237 kb on + strand, within AZOBR_RS10260at 2147.295 kb on - strand, within AZOBR_RS10260at 2147.295 kb on - strand, within AZOBR_RS10260at 2147.295 kb on - strand, within AZOBR_RS10260at 2147.444 kb on + strandat 2147.444 kb on + strandat 2147.444 kb on + strandat 2147.445 kb on - strandat 2147.445 kb on - strandat 2147.811 kb on - strandat 2147.995 kb on + strandat 2148.102 kb on + strand, within AZOBR_RS10265at 2148.102 kb on + strand, within AZOBR_RS10265at 2148.103 kb on - strand, within AZOBR_RS10265at 2148.103 kb on - strand, within AZOBR_RS10265at 2148.103 kb on - strand, within AZOBR_RS10265at 2148.191 kb on + strandat 2148.191 kb on + strand, within AZOBR_RS10265at 2148.191 kb on + strand, within AZOBR_RS10265at 2148.192 kb on - strand, within AZOBR_RS10265at 2148.195 kb on - strand, within AZOBR_RS10265at 2148.195 kb on - strand, within AZOBR_RS10265at 2148.218 kb on + strand, within AZOBR_RS10265at 2148.219 kb on - strand, within AZOBR_RS10265at 2148.413 kb on + strand, within AZOBR_RS10265at 2148.431 kb on + strand, within AZOBR_RS10265at 2148.534 kb on - strand, within AZOBR_RS10265at 2148.534 kb on - strand, within AZOBR_RS10265at 2148.639 kb on - strand, within AZOBR_RS10265at 2148.639 kb on - strand, within AZOBR_RS10265at 2148.644 kb on + strand, within AZOBR_RS10265at 2148.719 kb on + strand, within AZOBR_RS10265at 2148.719 kb on + strand, within AZOBR_RS10265at 2148.719 kb on + strand, within AZOBR_RS10265at 2149.104 kb on + strand, within AZOBR_RS10270at 2149.374 kb on + strand, within AZOBR_RS10270at 2149.717 kb on - strand, within AZOBR_RS10270at 2149.717 kb on - strand, within AZOBR_RS10270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
2,147,237 + AZOBR_RS10260 0.84 +0.1
2,147,295 - AZOBR_RS10260 0.86 -0.2
2,147,295 - AZOBR_RS10260 0.86 +0.2
2,147,295 - AZOBR_RS10260 0.86 -2.8
2,147,444 + -1.2
2,147,444 + -0.1
2,147,444 + -0.0
2,147,445 - +0.2
2,147,445 - -0.4
2,147,811 - +0.2
2,147,995 + +0.3
2,148,102 + AZOBR_RS10265 0.10 +0.2
2,148,102 + AZOBR_RS10265 0.10 -0.1
2,148,103 - AZOBR_RS10265 0.10 +0.2
2,148,103 - AZOBR_RS10265 0.10 -0.4
2,148,103 - AZOBR_RS10265 0.10 -0.7
2,148,191 + -0.4
2,148,191 + AZOBR_RS10265 0.21 -1.2
2,148,191 + AZOBR_RS10265 0.21 +0.4
2,148,192 - AZOBR_RS10265 0.21 -1.2
2,148,195 - AZOBR_RS10265 0.21 +0.4
2,148,195 - AZOBR_RS10265 0.21 -0.6
2,148,218 + AZOBR_RS10265 0.24 -0.4
2,148,219 - AZOBR_RS10265 0.24 -0.2
2,148,413 + AZOBR_RS10265 0.47 -0.1
2,148,431 + AZOBR_RS10265 0.49 +0.9
2,148,534 - AZOBR_RS10265 0.62 -0.2
2,148,534 - AZOBR_RS10265 0.62 -0.8
2,148,639 - AZOBR_RS10265 0.74 +0.8
2,148,639 - AZOBR_RS10265 0.74 +0.6
2,148,644 + AZOBR_RS10265 0.75 -0.7
2,148,719 + AZOBR_RS10265 0.84 +1.9
2,148,719 + AZOBR_RS10265 0.84 -0.0
2,148,719 + AZOBR_RS10265 0.84 +0.2
2,149,104 + AZOBR_RS10270 0.13 -0.1
2,149,374 + AZOBR_RS10270 0.28 +0.6
2,149,717 - AZOBR_RS10270 0.46 +0.2
2,149,717 - AZOBR_RS10270 0.46 +0.1

Or see this region's nucleotide sequence