Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09875

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09870 and AZOBR_RS09875 are separated by 11 nucleotidesAZOBR_RS09875 and AZOBR_RS09880 overlap by 29 nucleotidesAZOBR_RS09880 and AZOBR_RS09885 are separated by 201 nucleotides AZOBR_RS09870: AZOBR_RS09870 - chalcone synthase, at 2,068,444 to 2,069,493 _RS09870 AZOBR_RS09875: AZOBR_RS09875 - membrane protein, at 2,069,505 to 2,070,044 _RS09875 AZOBR_RS09880: AZOBR_RS09880 - hypothetical protein, at 2,070,016 to 2,070,390 _RS09880 AZOBR_RS09885: AZOBR_RS09885 - Crp/Fnr family transcriptional regulator, at 2,070,592 to 2,071,299 _RS09885 Position (kb) 2069 2070 2071Strain fitness (log2 ratio) -2 -1 0 1at 2068.630 kb on + strand, within AZOBR_RS09870at 2068.630 kb on + strand, within AZOBR_RS09870at 2068.631 kb on - strand, within AZOBR_RS09870at 2068.631 kb on - strand, within AZOBR_RS09870at 2068.752 kb on + strand, within AZOBR_RS09870at 2069.492 kb on - strandat 2069.644 kb on - strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.872 kb on - strand, within AZOBR_RS09875at 2069.872 kb on - strand, within AZOBR_RS09875at 2070.216 kb on - strand, within AZOBR_RS09880at 2070.245 kb on + strand, within AZOBR_RS09880at 2070.245 kb on + strand, within AZOBR_RS09880at 2070.245 kb on + strand, within AZOBR_RS09880at 2070.245 kb on + strand, within AZOBR_RS09880at 2070.246 kb on - strand, within AZOBR_RS09880at 2070.246 kb on - strand, within AZOBR_RS09880at 2070.246 kb on - strand, within AZOBR_RS09880at 2070.381 kb on - strandat 2070.542 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,068,630 + AZOBR_RS09870 0.18 -0.3
2,068,630 + AZOBR_RS09870 0.18 -0.5
2,068,631 - AZOBR_RS09870 0.18 +0.4
2,068,631 - AZOBR_RS09870 0.18 +0.4
2,068,752 + AZOBR_RS09870 0.29 -1.0
2,069,492 - -0.7
2,069,644 - AZOBR_RS09875 0.26 -0.3
2,069,871 + AZOBR_RS09875 0.68 -0.0
2,069,871 + AZOBR_RS09875 0.68 +0.4
2,069,871 + AZOBR_RS09875 0.68 -0.1
2,069,871 + AZOBR_RS09875 0.68 +0.1
2,069,871 + AZOBR_RS09875 0.68 +1.4
2,069,871 + AZOBR_RS09875 0.68 +0.1
2,069,872 - AZOBR_RS09875 0.68 +0.2
2,069,872 - AZOBR_RS09875 0.68 -0.5
2,070,216 - AZOBR_RS09880 0.53 +1.0
2,070,245 + AZOBR_RS09880 0.61 +0.2
2,070,245 + AZOBR_RS09880 0.61 +0.1
2,070,245 + AZOBR_RS09880 0.61 -0.5
2,070,245 + AZOBR_RS09880 0.61 -2.2
2,070,246 - AZOBR_RS09880 0.61 -0.2
2,070,246 - AZOBR_RS09880 0.61 -0.1
2,070,246 - AZOBR_RS09880 0.61 +0.6
2,070,381 - -0.6
2,070,542 + -0.8

Or see this region's nucleotide sequence