Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27810

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27800 and AO353_27805 are separated by 399 nucleotidesAO353_27805 and AO353_27810 overlap by 4 nucleotidesAO353_27810 and AO353_27815 are separated by 80 nucleotides AO353_27800: AO353_27800 - NADH:ubiquinone oxidoreductase subunit N, at 6,061,505 to 6,062,968 _27800 AO353_27805: AO353_27805 - antitoxin, at 6,063,368 to 6,063,607 _27805 AO353_27810: AO353_27810 - twitching motility protein PilT, at 6,063,604 to 6,063,981 _27810 AO353_27815: AO353_27815 - cysteine--tRNA ligase, at 6,064,062 to 6,065,444 _27815 Position (kb) 6063 6064Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 6063.057 kb on + strandat 6063.058 kb on - strandat 6063.058 kb on - strandat 6063.112 kb on - strandat 6063.154 kb on + strandat 6063.155 kb on - strandat 6063.155 kb on - strandat 6063.227 kb on - strandat 6063.274 kb on + strandat 6063.299 kb on + strandat 6063.299 kb on + strandat 6063.299 kb on + strandat 6063.299 kb on + strandat 6063.299 kb on + strandat 6063.299 kb on + strandat 6063.299 kb on + strandat 6063.299 kb on + strandat 6063.299 kb on + strandat 6063.300 kb on - strandat 6063.300 kb on - strandat 6063.300 kb on - strandat 6063.300 kb on - strandat 6063.340 kb on + strandat 6063.454 kb on + strand, within AO353_27805at 6063.615 kb on - strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.627 kb on + strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.628 kb on - strandat 6063.663 kb on - strand, within AO353_27810at 6063.706 kb on + strand, within AO353_27810at 6063.706 kb on + strand, within AO353_27810at 6063.706 kb on + strand, within AO353_27810at 6063.707 kb on - strand, within AO353_27810at 6063.707 kb on - strand, within AO353_27810at 6063.720 kb on + strand, within AO353_27810at 6063.720 kb on + strand, within AO353_27810at 6063.721 kb on - strand, within AO353_27810at 6063.761 kb on + strand, within AO353_27810at 6063.761 kb on + strand, within AO353_27810at 6063.762 kb on - strand, within AO353_27810at 6063.790 kb on + strand, within AO353_27810at 6063.790 kb on + strand, within AO353_27810at 6063.812 kb on + strand, within AO353_27810at 6063.812 kb on + strand, within AO353_27810at 6063.891 kb on + strand, within AO353_27810at 6063.891 kb on + strand, within AO353_27810at 6063.892 kb on - strand, within AO353_27810at 6063.892 kb on - strand, within AO353_27810at 6063.926 kb on + strand, within AO353_27810at 6063.926 kb on + strand, within AO353_27810at 6063.927 kb on - strand, within AO353_27810at 6063.944 kb on + strandat 6063.955 kb on + strandat 6063.955 kb on + strandat 6063.956 kb on - strandat 6063.956 kb on - strandat 6063.980 kb on - strandat 6063.989 kb on + strandat 6063.989 kb on + strandat 6063.989 kb on + strandat 6063.989 kb on + strandat 6063.989 kb on + strandat 6063.990 kb on - strandat 6063.990 kb on - strandat 6064.004 kb on + strandat 6064.004 kb on + strandat 6064.004 kb on + strandat 6064.005 kb on - strandat 6064.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,063,057 + +3.8
6,063,058 - -1.3
6,063,058 - +0.2
6,063,112 - +0.1
6,063,154 + -1.3
6,063,155 - -0.1
6,063,155 - +0.5
6,063,227 - -0.3
6,063,274 + -0.3
6,063,299 + +1.4
6,063,299 + +0.4
6,063,299 + +1.3
6,063,299 + +1.0
6,063,299 + +1.0
6,063,299 + -1.3
6,063,299 + -0.3
6,063,299 + +1.0
6,063,299 + -0.9
6,063,300 - -0.5
6,063,300 - +0.3
6,063,300 - +0.2
6,063,300 - +0.7
6,063,340 + -0.7
6,063,454 + AO353_27805 0.36 +0.5
6,063,615 - +1.4
6,063,627 + -1.3
6,063,627 + -0.8
6,063,627 + +0.5
6,063,627 + -0.6
6,063,627 + -0.3
6,063,627 + +1.3
6,063,627 + +0.7
6,063,627 + +0.7
6,063,627 + -0.3
6,063,627 + -1.3
6,063,627 + +1.0
6,063,627 + +1.0
6,063,627 + +1.2
6,063,628 - +1.0
6,063,628 - +0.1
6,063,628 - -1.0
6,063,628 - -0.3
6,063,628 - -0.3
6,063,628 - +0.7
6,063,628 - +1.5
6,063,628 - -0.3
6,063,628 - -0.3
6,063,628 - +0.3
6,063,628 - -0.3
6,063,628 - +2.7
6,063,663 - AO353_27810 0.16 +0.7
6,063,706 + AO353_27810 0.27 -1.1
6,063,706 + AO353_27810 0.27 -0.9
6,063,706 + AO353_27810 0.27 -0.3
6,063,707 - AO353_27810 0.27 +0.2
6,063,707 - AO353_27810 0.27 -0.7
6,063,720 + AO353_27810 0.31 -0.7
6,063,720 + AO353_27810 0.31 -1.6
6,063,721 - AO353_27810 0.31 -0.7
6,063,761 + AO353_27810 0.42 -0.9
6,063,761 + AO353_27810 0.42 -1.6
6,063,762 - AO353_27810 0.42 -2.3
6,063,790 + AO353_27810 0.49 -0.9
6,063,790 + AO353_27810 0.49 +0.7
6,063,812 + AO353_27810 0.55 +0.1
6,063,812 + AO353_27810 0.55 -0.3
6,063,891 + AO353_27810 0.76 -1.9
6,063,891 + AO353_27810 0.76 +1.1
6,063,892 - AO353_27810 0.76 -1.3
6,063,892 - AO353_27810 0.76 +0.7
6,063,926 + AO353_27810 0.85 +0.5
6,063,926 + AO353_27810 0.85 -1.6
6,063,927 - AO353_27810 0.85 -0.7
6,063,944 + -1.9
6,063,955 + +0.2
6,063,955 + +1.0
6,063,956 - +1.3
6,063,956 - +0.7
6,063,980 - -0.3
6,063,989 + +1.3
6,063,989 + -0.3
6,063,989 + -1.0
6,063,989 + +1.3
6,063,989 + -0.3
6,063,990 - -2.3
6,063,990 - -2.3
6,064,004 + +0.7
6,064,004 + -0.3
6,064,004 + -0.8
6,064,005 - +2.0
6,064,005 - +0.5

Or see this region's nucleotide sequence