Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26795

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26790 and AO353_26795 are separated by 166 nucleotidesAO353_26795 and AO353_26800 overlap by 23 nucleotides AO353_26790: AO353_26790 - Glutaminase (EC 3.5.1.2) (from data), at 5,868,564 to 5,869,472 _26790 AO353_26795: AO353_26795 - NAD-dependent deacetylase, at 5,869,639 to 5,870,502 _26795 AO353_26800: AO353_26800 - hydrogen cyanide synthase, at 5,870,480 to 5,871,739 _26800 Position (kb) 5869 5870 5871Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5868.706 kb on - strand, within AO353_26790at 5868.706 kb on - strand, within AO353_26790at 5868.760 kb on + strand, within AO353_26790at 5868.760 kb on + strand, within AO353_26790at 5868.761 kb on - strand, within AO353_26790at 5868.916 kb on + strand, within AO353_26790at 5868.916 kb on + strand, within AO353_26790at 5868.917 kb on - strand, within AO353_26790at 5868.917 kb on - strand, within AO353_26790at 5868.917 kb on - strand, within AO353_26790at 5868.917 kb on - strand, within AO353_26790at 5868.936 kb on + strand, within AO353_26790at 5868.937 kb on - strand, within AO353_26790at 5868.937 kb on - strand, within AO353_26790at 5868.937 kb on - strand, within AO353_26790at 5868.974 kb on - strand, within AO353_26790at 5868.974 kb on - strand, within AO353_26790at 5868.974 kb on - strand, within AO353_26790at 5869.289 kb on + strand, within AO353_26790at 5869.289 kb on + strand, within AO353_26790at 5869.290 kb on - strand, within AO353_26790at 5869.290 kb on - strand, within AO353_26790at 5869.330 kb on + strand, within AO353_26790at 5869.351 kb on + strand, within AO353_26790at 5869.351 kb on + strand, within AO353_26790at 5869.352 kb on - strand, within AO353_26790at 5869.402 kb on + strandat 5869.402 kb on + strandat 5869.402 kb on + strandat 5869.402 kb on + strandat 5869.402 kb on + strandat 5869.403 kb on - strandat 5869.403 kb on - strandat 5869.403 kb on - strandat 5869.403 kb on - strandat 5869.403 kb on - strandat 5869.403 kb on - strandat 5869.403 kb on - strandat 5869.403 kb on - strandat 5869.403 kb on - strandat 5869.406 kb on + strandat 5869.406 kb on + strandat 5869.406 kb on + strandat 5869.406 kb on + strandat 5869.406 kb on + strandat 5869.520 kb on + strandat 5869.521 kb on - strandat 5869.580 kb on - strandat 5869.595 kb on + strandat 5869.595 kb on + strandat 5869.596 kb on - strandat 5869.596 kb on - strandat 5869.596 kb on - strandat 5869.596 kb on - strandat 5869.596 kb on - strandat 5869.596 kb on - strandat 5869.754 kb on - strand, within AO353_26795at 5869.798 kb on + strand, within AO353_26795at 5869.798 kb on + strand, within AO353_26795at 5869.798 kb on + strand, within AO353_26795at 5869.798 kb on + strand, within AO353_26795at 5869.798 kb on + strand, within AO353_26795at 5869.799 kb on - strand, within AO353_26795at 5869.799 kb on - strand, within AO353_26795at 5869.799 kb on - strand, within AO353_26795at 5869.799 kb on - strand, within AO353_26795at 5870.447 kb on + strandat 5870.447 kb on + strandat 5870.447 kb on + strandat 5870.447 kb on + strandat 5870.447 kb on + strandat 5870.447 kb on + strandat 5870.447 kb on + strandat 5870.447 kb on + strandat 5870.447 kb on + strandat 5870.447 kb on + strandat 5870.448 kb on - strandat 5870.448 kb on - strandat 5870.448 kb on - strandat 5870.652 kb on + strand, within AO353_26800at 5870.878 kb on - strand, within AO353_26800at 5870.878 kb on - strand, within AO353_26800at 5871.117 kb on + strand, within AO353_26800at 5871.117 kb on + strand, within AO353_26800at 5871.117 kb on + strand, within AO353_26800at 5871.117 kb on + strand, within AO353_26800at 5871.117 kb on + strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.118 kb on - strand, within AO353_26800at 5871.121 kb on + strand, within AO353_26800at 5871.121 kb on + strand, within AO353_26800at 5871.122 kb on - strand, within AO353_26800at 5871.122 kb on - strand, within AO353_26800at 5871.122 kb on - strand, within AO353_26800at 5871.122 kb on - strand, within AO353_26800at 5871.153 kb on + strand, within AO353_26800at 5871.318 kb on + strand, within AO353_26800at 5871.318 kb on + strand, within AO353_26800at 5871.318 kb on + strand, within AO353_26800at 5871.319 kb on - strand, within AO353_26800at 5871.319 kb on - strand, within AO353_26800at 5871.339 kb on + strand, within AO353_26800at 5871.340 kb on - strand, within AO353_26800at 5871.340 kb on - strand, within AO353_26800at 5871.340 kb on - strand, within AO353_26800at 5871.340 kb on - strand, within AO353_26800at 5871.420 kb on + strand, within AO353_26800at 5871.420 kb on + strand, within AO353_26800at 5871.421 kb on - strand, within AO353_26800at 5871.421 kb on - strand, within AO353_26800at 5871.479 kb on - strand, within AO353_26800

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,868,706 - AO353_26790 0.16 -2.0
5,868,706 - AO353_26790 0.16 +0.0
5,868,760 + AO353_26790 0.22 +0.1
5,868,760 + AO353_26790 0.22 -2.0
5,868,761 - AO353_26790 0.22 +1.9
5,868,916 + AO353_26790 0.39 +0.6
5,868,916 + AO353_26790 0.39 +0.0
5,868,917 - AO353_26790 0.39 -0.3
5,868,917 - AO353_26790 0.39 -1.8
5,868,917 - AO353_26790 0.39 -0.8
5,868,917 - AO353_26790 0.39 +1.2
5,868,936 + AO353_26790 0.41 -0.1
5,868,937 - AO353_26790 0.41 +1.2
5,868,937 - AO353_26790 0.41 +0.7
5,868,937 - AO353_26790 0.41 +1.6
5,868,974 - AO353_26790 0.45 +0.2
5,868,974 - AO353_26790 0.45 +1.6
5,868,974 - AO353_26790 0.45 +0.3
5,869,289 + AO353_26790 0.80 -0.7
5,869,289 + AO353_26790 0.80 +1.9
5,869,290 - AO353_26790 0.80 +1.2
5,869,290 - AO353_26790 0.80 +2.1
5,869,330 + AO353_26790 0.84 +0.6
5,869,351 + AO353_26790 0.87 -0.4
5,869,351 + AO353_26790 0.87 -0.4
5,869,352 - AO353_26790 0.87 +1.6
5,869,402 + -0.4
5,869,402 + -0.4
5,869,402 + -1.4
5,869,402 + -0.1
5,869,402 + +1.9
5,869,403 - +1.9
5,869,403 - -2.0
5,869,403 - +0.0
5,869,403 - -1.4
5,869,403 - -1.0
5,869,403 - -0.7
5,869,403 - +1.6
5,869,403 - -2.4
5,869,403 - -0.4
5,869,406 + +1.6
5,869,406 + +0.6
5,869,406 + -2.4
5,869,406 + -0.4
5,869,406 + +1.9
5,869,520 + -0.4
5,869,521 - -0.4
5,869,580 - -0.4
5,869,595 + +0.2
5,869,595 + -0.7
5,869,596 - +1.2
5,869,596 - +0.9
5,869,596 - -0.1
5,869,596 - -0.4
5,869,596 - +1.1
5,869,596 - +2.2
5,869,754 - AO353_26795 0.13 -1.4
5,869,798 + AO353_26795 0.18 -1.4
5,869,798 + AO353_26795 0.18 -0.4
5,869,798 + AO353_26795 0.18 -1.2
5,869,798 + AO353_26795 0.18 +0.2
5,869,798 + AO353_26795 0.18 -0.8
5,869,799 - AO353_26795 0.19 -0.4
5,869,799 - AO353_26795 0.19 -0.1
5,869,799 - AO353_26795 0.19 +0.0
5,869,799 - AO353_26795 0.19 -1.8
5,870,447 + -0.6
5,870,447 + +1.9
5,870,447 + +0.9
5,870,447 + +1.5
5,870,447 + +1.7
5,870,447 + +1.2
5,870,447 + +1.7
5,870,447 + +1.6
5,870,447 + +0.6
5,870,447 + +0.2
5,870,448 - -2.0
5,870,448 - -0.4
5,870,448 - -0.2
5,870,652 + AO353_26800 0.14 +1.1
5,870,878 - AO353_26800 0.32 -0.4
5,870,878 - AO353_26800 0.32 +0.2
5,871,117 + AO353_26800 0.51 +1.2
5,871,117 + AO353_26800 0.51 +1.9
5,871,117 + AO353_26800 0.51 +1.2
5,871,117 + AO353_26800 0.51 +2.8
5,871,117 + AO353_26800 0.51 +0.9
5,871,118 - AO353_26800 0.51 +0.2
5,871,118 - AO353_26800 0.51 +0.2
5,871,118 - AO353_26800 0.51 +0.2
5,871,118 - AO353_26800 0.51 +0.2
5,871,118 - AO353_26800 0.51 -1.4
5,871,118 - AO353_26800 0.51 +0.1
5,871,118 - AO353_26800 0.51 +0.2
5,871,118 - AO353_26800 0.51 +0.6
5,871,118 - AO353_26800 0.51 +0.3
5,871,118 - AO353_26800 0.51 +0.0
5,871,118 - AO353_26800 0.51 -1.0
5,871,121 + AO353_26800 0.51 -0.7
5,871,121 + AO353_26800 0.51 -1.4
5,871,122 - AO353_26800 0.51 +1.2
5,871,122 - AO353_26800 0.51 +0.4
5,871,122 - AO353_26800 0.51 -1.0
5,871,122 - AO353_26800 0.51 +2.4
5,871,153 + AO353_26800 0.53 +0.6
5,871,318 + AO353_26800 0.67 +0.9
5,871,318 + AO353_26800 0.67 +0.8
5,871,318 + AO353_26800 0.67 -0.6
5,871,319 - AO353_26800 0.67 +0.9
5,871,319 - AO353_26800 0.67 -0.9
5,871,339 + AO353_26800 0.68 -0.8
5,871,340 - AO353_26800 0.68 -0.7
5,871,340 - AO353_26800 0.68 -0.4
5,871,340 - AO353_26800 0.68 -1.4
5,871,340 - AO353_26800 0.68 -0.1
5,871,420 + AO353_26800 0.75 +1.1
5,871,420 + AO353_26800 0.75 +0.5
5,871,421 - AO353_26800 0.75 +0.9
5,871,421 - AO353_26800 0.75 +0.6
5,871,479 - AO353_26800 0.79 +1.6

Or see this region's nucleotide sequence