Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21520

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21515 and AO353_21520 are separated by 814 nucleotidesAO353_21520 and AO353_21525 are separated by 33 nucleotides AO353_21515: AO353_21515 - type IV secretion protein Rhs, at 4,707,272 to 4,709,281 _21515 AO353_21520: AO353_21520 - hypothetical protein, at 4,710,096 to 4,710,632 _21520 AO353_21525: AO353_21525 - ClpV1 family T6SS ATPase, at 4,710,666 to 4,713,215 _21525 Position (kb) 4710 4711Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4709.217 kb on + strandat 4709.330 kb on + strandat 4709.334 kb on + strandat 4709.334 kb on + strandat 4709.334 kb on + strandat 4709.334 kb on + strandat 4709.335 kb on - strandat 4709.335 kb on - strandat 4709.335 kb on - strandat 4709.389 kb on + strandat 4709.389 kb on + strandat 4709.389 kb on + strandat 4709.389 kb on + strandat 4709.389 kb on + strandat 4709.389 kb on + strandat 4709.389 kb on + strandat 4709.389 kb on + strandat 4709.389 kb on + strandat 4709.390 kb on - strandat 4709.390 kb on - strandat 4709.390 kb on - strandat 4709.390 kb on - strandat 4709.418 kb on + strandat 4709.504 kb on + strandat 4709.504 kb on + strandat 4709.504 kb on + strandat 4709.504 kb on + strandat 4709.505 kb on - strandat 4709.542 kb on - strandat 4709.548 kb on + strandat 4709.549 kb on - strandat 4709.549 kb on - strandat 4709.609 kb on + strandat 4709.610 kb on - strandat 4709.613 kb on - strandat 4709.613 kb on - strandat 4709.613 kb on - strandat 4709.646 kb on - strandat 4709.696 kb on - strandat 4709.726 kb on + strandat 4709.727 kb on - strandat 4709.727 kb on - strandat 4709.782 kb on + strandat 4709.782 kb on + strandat 4709.782 kb on + strandat 4709.782 kb on + strandat 4709.783 kb on - strandat 4709.783 kb on - strandat 4709.797 kb on + strandat 4709.797 kb on + strandat 4709.797 kb on + strandat 4709.798 kb on - strandat 4709.798 kb on - strandat 4709.829 kb on + strandat 4709.830 kb on - strandat 4709.830 kb on - strandat 4709.846 kb on + strandat 4709.862 kb on - strandat 4709.862 kb on - strandat 4709.895 kb on + strandat 4709.895 kb on + strandat 4709.895 kb on + strandat 4709.896 kb on - strandat 4709.896 kb on - strandat 4709.898 kb on - strandat 4709.898 kb on - strandat 4709.906 kb on + strandat 4709.914 kb on - strandat 4709.919 kb on + strandat 4709.919 kb on + strandat 4709.920 kb on - strandat 4709.971 kb on + strandat 4709.972 kb on - strandat 4709.972 kb on - strandat 4709.984 kb on + strandat 4709.985 kb on - strandat 4709.985 kb on - strandat 4709.985 kb on - strandat 4709.988 kb on + strandat 4709.989 kb on - strandat 4709.989 kb on - strandat 4709.989 kb on - strandat 4710.061 kb on + strandat 4710.144 kb on + strandat 4710.145 kb on - strandat 4710.145 kb on - strandat 4710.189 kb on - strand, within AO353_21520at 4710.189 kb on - strand, within AO353_21520at 4710.227 kb on - strand, within AO353_21520at 4710.312 kb on + strand, within AO353_21520at 4710.313 kb on - strand, within AO353_21520at 4710.324 kb on + strand, within AO353_21520at 4710.325 kb on - strand, within AO353_21520at 4710.335 kb on + strand, within AO353_21520at 4710.381 kb on - strand, within AO353_21520at 4710.437 kb on + strand, within AO353_21520at 4710.481 kb on + strand, within AO353_21520at 4710.552 kb on + strand, within AO353_21520at 4710.553 kb on - strand, within AO353_21520at 4710.561 kb on + strand, within AO353_21520at 4710.616 kb on + strandat 4710.616 kb on + strandat 4710.626 kb on - strandat 4710.649 kb on - strandat 4710.655 kb on + strandat 4710.659 kb on + strandat 4710.659 kb on + strandat 4710.660 kb on - strandat 4710.660 kb on - strandat 4710.814 kb on + strandat 4710.815 kb on - strandat 4711.097 kb on + strand, within AO353_21525at 4711.099 kb on + strand, within AO353_21525at 4711.099 kb on + strand, within AO353_21525at 4711.099 kb on + strand, within AO353_21525at 4711.099 kb on + strand, within AO353_21525at 4711.099 kb on + strand, within AO353_21525at 4711.100 kb on - strand, within AO353_21525at 4711.100 kb on - strand, within AO353_21525at 4711.100 kb on - strand, within AO353_21525at 4711.159 kb on + strand, within AO353_21525at 4711.160 kb on - strand, within AO353_21525at 4711.160 kb on - strand, within AO353_21525at 4711.214 kb on - strand, within AO353_21525at 4711.214 kb on - strand, within AO353_21525at 4711.262 kb on - strand, within AO353_21525at 4711.262 kb on - strand, within AO353_21525at 4711.277 kb on + strand, within AO353_21525at 4711.278 kb on - strand, within AO353_21525at 4711.304 kb on - strand, within AO353_21525at 4711.340 kb on + strand, within AO353_21525at 4711.340 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,709,217 + +2.3
4,709,330 + +0.7
4,709,334 + +2.0
4,709,334 + +0.3
4,709,334 + +0.3
4,709,334 + +2.0
4,709,335 - +1.7
4,709,335 - -1.3
4,709,335 - +1.4
4,709,389 + -0.9
4,709,389 + -0.7
4,709,389 + +0.3
4,709,389 + -0.9
4,709,389 + -0.1
4,709,389 + +1.3
4,709,389 + -2.3
4,709,389 + +2.9
4,709,389 + +2.0
4,709,390 - -1.9
4,709,390 - -0.0
4,709,390 - -1.3
4,709,390 - +0.7
4,709,418 + +0.4
4,709,504 + +1.3
4,709,504 + -0.3
4,709,504 + +0.7
4,709,504 + +2.2
4,709,505 - -0.3
4,709,542 - +1.0
4,709,548 + -0.7
4,709,549 - -0.3
4,709,549 - +0.9
4,709,609 + -0.1
4,709,610 - +0.0
4,709,613 - +0.3
4,709,613 - +1.3
4,709,613 - +0.7
4,709,646 - +0.4
4,709,696 - -0.7
4,709,726 + -0.9
4,709,727 - -0.3
4,709,727 - -0.3
4,709,782 + +1.0
4,709,782 + +1.3
4,709,782 + +1.0
4,709,782 + +3.0
4,709,783 - -1.1
4,709,783 - +0.3
4,709,797 + -1.6
4,709,797 + -0.9
4,709,797 + -1.9
4,709,798 - +1.1
4,709,798 - +1.3
4,709,829 + +0.7
4,709,830 - +0.7
4,709,830 - +1.3
4,709,846 + -0.3
4,709,862 - +0.7
4,709,862 - +0.7
4,709,895 + +1.4
4,709,895 + -0.6
4,709,895 + -1.3
4,709,896 - +1.5
4,709,896 - -1.3
4,709,898 - -0.3
4,709,898 - +0.0
4,709,906 + +0.4
4,709,914 - -2.3
4,709,919 + -0.3
4,709,919 + -0.3
4,709,920 - -0.3
4,709,971 + +3.2
4,709,972 - -0.3
4,709,972 - +2.2
4,709,984 + -0.5
4,709,985 - +1.3
4,709,985 - +1.4
4,709,985 - -0.3
4,709,988 + +1.3
4,709,989 - +0.7
4,709,989 - +1.3
4,709,989 - +0.7
4,710,061 + +2.3
4,710,144 + -0.6
4,710,145 - -0.3
4,710,145 - -0.6
4,710,189 - AO353_21520 0.17 -1.5
4,710,189 - AO353_21520 0.17 -0.3
4,710,227 - AO353_21520 0.24 -2.9
4,710,312 + AO353_21520 0.40 -1.3
4,710,313 - AO353_21520 0.40 +0.3
4,710,324 + AO353_21520 0.42 +1.0
4,710,325 - AO353_21520 0.43 -0.9
4,710,335 + AO353_21520 0.45 -1.3
4,710,381 - AO353_21520 0.53 +0.1
4,710,437 + AO353_21520 0.64 -1.3
4,710,481 + AO353_21520 0.72 -0.6
4,710,552 + AO353_21520 0.85 -0.3
4,710,553 - AO353_21520 0.85 -2.3
4,710,561 + AO353_21520 0.87 +0.2
4,710,616 + +0.3
4,710,616 + +1.2
4,710,626 - -0.3
4,710,649 - -0.3
4,710,655 + +0.3
4,710,659 + +1.7
4,710,659 + +0.3
4,710,660 - +0.7
4,710,660 - +2.0
4,710,814 + +0.2
4,710,815 - +0.2
4,711,097 + AO353_21525 0.17 -0.6
4,711,099 + AO353_21525 0.17 -3.3
4,711,099 + AO353_21525 0.17 +1.3
4,711,099 + AO353_21525 0.17 -0.3
4,711,099 + AO353_21525 0.17 -0.7
4,711,099 + AO353_21525 0.17 +1.5
4,711,100 - AO353_21525 0.17 +0.5
4,711,100 - AO353_21525 0.17 +1.0
4,711,100 - AO353_21525 0.17 +0.2
4,711,159 + AO353_21525 0.19 -1.6
4,711,160 - AO353_21525 0.19 +0.4
4,711,160 - AO353_21525 0.19 +1.9
4,711,214 - AO353_21525 0.21 +0.0
4,711,214 - AO353_21525 0.21 +1.7
4,711,262 - AO353_21525 0.23 +0.9
4,711,262 - AO353_21525 0.23 +1.1
4,711,277 + AO353_21525 0.24 -0.7
4,711,278 - AO353_21525 0.24 +0.7
4,711,304 - AO353_21525 0.25 +0.1
4,711,340 + AO353_21525 0.26 +0.3
4,711,340 + -0.3

Or see this region's nucleotide sequence