Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10620

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10610 and AO353_10615 are separated by 71 nucleotidesAO353_10615 and AO353_10620 are separated by 16 nucleotidesAO353_10620 and AO353_10625 are separated by 178 nucleotides AO353_10610: AO353_10610 - lipid A biosynthesis lauroyl acyltransferase, at 2,327,492 to 2,328,379 _10610 AO353_10615: AO353_10615 - pilus assembly protein PilZ, at 2,328,451 to 2,328,690 _10615 AO353_10620: AO353_10620 - hypothetical protein, at 2,328,707 to 2,329,021 _10620 AO353_10625: AO353_10625 - potassium transporter peripheral membrane component, at 2,329,200 to 2,330,573 _10625 Position (kb) 2328 2329 2330Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2328.375 kb on - strandat 2328.465 kb on + strandat 2328.465 kb on + strandat 2328.465 kb on + strandat 2328.465 kb on + strandat 2328.465 kb on + strandat 2328.465 kb on + strandat 2328.465 kb on + strandat 2328.465 kb on + strandat 2328.465 kb on + strandat 2328.465 kb on + strandat 2328.465 kb on + strandat 2328.466 kb on - strandat 2328.466 kb on - strandat 2328.466 kb on - strandat 2328.466 kb on - strandat 2328.466 kb on - strandat 2328.466 kb on - strandat 2328.466 kb on - strandat 2328.547 kb on + strand, within AO353_10615at 2328.547 kb on + strand, within AO353_10615at 2328.548 kb on - strand, within AO353_10615at 2328.548 kb on - strand, within AO353_10615at 2328.595 kb on + strand, within AO353_10615at 2328.595 kb on + strand, within AO353_10615at 2328.595 kb on + strand, within AO353_10615at 2328.595 kb on + strand, within AO353_10615at 2328.595 kb on + strand, within AO353_10615at 2328.595 kb on + strand, within AO353_10615at 2328.596 kb on - strand, within AO353_10615at 2328.596 kb on - strand, within AO353_10615at 2328.596 kb on - strand, within AO353_10615at 2328.596 kb on - strand, within AO353_10615at 2328.596 kb on - strand, within AO353_10615at 2328.596 kb on - strand, within AO353_10615at 2328.683 kb on - strandat 2328.683 kb on - strandat 2328.725 kb on + strandat 2328.726 kb on - strandat 2328.726 kb on - strandat 2328.843 kb on + strand, within AO353_10620at 2328.843 kb on + strand, within AO353_10620at 2328.843 kb on + strand, within AO353_10620at 2328.843 kb on + strand, within AO353_10620at 2328.843 kb on + strand, within AO353_10620at 2328.843 kb on + strand, within AO353_10620at 2328.843 kb on + strand, within AO353_10620at 2328.843 kb on + strand, within AO353_10620at 2328.843 kb on + strand, within AO353_10620at 2328.844 kb on - strand, within AO353_10620at 2328.844 kb on - strand, within AO353_10620at 2328.844 kb on - strand, within AO353_10620at 2328.844 kb on - strand, within AO353_10620at 2328.844 kb on - strand, within AO353_10620at 2328.844 kb on - strand, within AO353_10620at 2328.876 kb on + strand, within AO353_10620at 2328.876 kb on + strand, within AO353_10620at 2328.876 kb on + strand, within AO353_10620at 2328.876 kb on + strand, within AO353_10620at 2328.945 kb on + strand, within AO353_10620at 2328.946 kb on - strand, within AO353_10620at 2329.023 kb on + strandat 2329.023 kb on + strandat 2329.023 kb on + strandat 2329.023 kb on + strandat 2329.023 kb on + strandat 2329.023 kb on + strandat 2329.023 kb on + strandat 2329.023 kb on + strandat 2329.023 kb on + strandat 2329.023 kb on + strandat 2329.023 kb on + strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.024 kb on - strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.131 kb on + strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.132 kb on - strandat 2329.247 kb on + strandat 2329.247 kb on + strandat 2329.247 kb on + strandat 2329.247 kb on + strandat 2329.247 kb on + strandat 2329.248 kb on - strandat 2329.248 kb on - strandat 2329.248 kb on - strandat 2329.248 kb on - strandat 2329.257 kb on - strandat 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.349 kb on + strand, within AO353_10625at 2329.350 kb on - strand, within AO353_10625at 2329.350 kb on - strand, within AO353_10625at 2329.350 kb on - strand, within AO353_10625at 2329.350 kb on - strand, within AO353_10625at 2329.350 kb on - strand, within AO353_10625at 2329.350 kb on - strand, within AO353_10625at 2329.350 kb on - strand, within AO353_10625at 2329.350 kb on - strand, within AO353_10625at 2329.352 kb on + strand, within AO353_10625at 2329.352 kb on + strand, within AO353_10625at 2329.352 kb on + strand, within AO353_10625at 2329.352 kb on + strand, within AO353_10625at 2329.353 kb on - strand, within AO353_10625at 2329.353 kb on - strand, within AO353_10625at 2329.353 kb on - strand, within AO353_10625at 2329.353 kb on - strand, within AO353_10625at 2329.353 kb on - strand, within AO353_10625at 2329.353 kb on - strand, within AO353_10625at 2329.353 kb on - strand, within AO353_10625at 2329.353 kb on - strand, within AO353_10625at 2329.509 kb on - strand, within AO353_10625at 2329.547 kb on + strand, within AO353_10625at 2329.573 kb on + strand, within AO353_10625at 2329.573 kb on + strand, within AO353_10625at 2329.573 kb on + strand, within AO353_10625at 2329.573 kb on + strand, within AO353_10625at 2329.573 kb on + strand, within AO353_10625at 2329.573 kb on + strand, within AO353_10625at 2329.573 kb on + strand, within AO353_10625at 2329.573 kb on + strand, within AO353_10625at 2329.573 kb on + strand, within AO353_10625at 2329.573 kb on + strand, within AO353_10625at 2329.574 kb on - strand, within AO353_10625at 2329.574 kb on - strand, within AO353_10625at 2329.695 kb on - strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.710 kb on + strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.711 kb on - strand, within AO353_10625at 2329.771 kb on + strand, within AO353_10625at 2329.771 kb on + strand, within AO353_10625at 2329.814 kb on - strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.882 kb on + strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.883 kb on - strand, within AO353_10625at 2329.944 kb on - strand, within AO353_10625

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,328,375 - -1.0
2,328,465 + -0.7
2,328,465 + -1.4
2,328,465 + -0.3
2,328,465 + -1.2
2,328,465 + +1.0
2,328,465 + -0.4
2,328,465 + -0.8
2,328,465 + +1.6
2,328,465 + +0.6
2,328,465 + +0.3
2,328,465 + +0.1
2,328,466 - +1.7
2,328,466 - +1.3
2,328,466 - -0.4
2,328,466 - +0.1
2,328,466 - -0.8
2,328,466 - -0.4
2,328,466 - +0.6
2,328,547 + AO353_10615 0.40 -0.1
2,328,547 + AO353_10615 0.40 -1.4
2,328,548 - AO353_10615 0.40 +1.6
2,328,548 - AO353_10615 0.40 +0.6
2,328,595 + AO353_10615 0.60 -0.8
2,328,595 + AO353_10615 0.60 -1.0
2,328,595 + AO353_10615 0.60 -1.0
2,328,595 + AO353_10615 0.60 -2.7
2,328,595 + AO353_10615 0.60 +1.6
2,328,595 + AO353_10615 0.60 -1.8
2,328,596 - AO353_10615 0.60 +0.3
2,328,596 - AO353_10615 0.60 -0.9
2,328,596 - AO353_10615 0.60 -2.8
2,328,596 - AO353_10615 0.60 +1.6
2,328,596 - AO353_10615 0.60 +0.2
2,328,596 - AO353_10615 0.60 +0.9
2,328,683 - +0.7
2,328,683 - -0.3
2,328,725 + -1.0
2,328,726 - +0.6
2,328,726 - -0.4
2,328,843 + AO353_10620 0.43 +1.0
2,328,843 + AO353_10620 0.43 -2.0
2,328,843 + AO353_10620 0.43 -0.4
2,328,843 + AO353_10620 0.43 -0.4
2,328,843 + AO353_10620 0.43 -2.2
2,328,843 + AO353_10620 0.43 -0.4
2,328,843 + AO353_10620 0.43 -1.0
2,328,843 + AO353_10620 0.43 -1.0
2,328,843 + AO353_10620 0.43 +2.9
2,328,844 - AO353_10620 0.43 -2.4
2,328,844 - AO353_10620 0.43 +1.9
2,328,844 - AO353_10620 0.43 -0.4
2,328,844 - AO353_10620 0.43 -1.4
2,328,844 - AO353_10620 0.43 +0.6
2,328,844 - AO353_10620 0.43 -1.8
2,328,876 + AO353_10620 0.54 +0.6
2,328,876 + AO353_10620 0.54 -2.0
2,328,876 + AO353_10620 0.54 +0.1
2,328,876 + AO353_10620 0.54 -2.6
2,328,945 + AO353_10620 0.76 +0.6
2,328,946 - AO353_10620 0.76 -1.8
2,329,023 + -0.4
2,329,023 + -1.0
2,329,023 + -1.0
2,329,023 + -3.1
2,329,023 + -1.8
2,329,023 + -1.9
2,329,023 + -2.0
2,329,023 + -0.4
2,329,023 + -1.0
2,329,023 + -2.4
2,329,023 + -0.4
2,329,024 - -0.8
2,329,024 - -1.4
2,329,024 - -1.4
2,329,024 - +0.1
2,329,024 - +0.6
2,329,024 - -1.8
2,329,024 - -1.4
2,329,024 - -0.4
2,329,024 - +0.6
2,329,024 - -0.4
2,329,024 - -0.4
2,329,024 - -1.0
2,329,024 - +2.6
2,329,024 - +0.6
2,329,024 - -2.6
2,329,131 + -0.1
2,329,131 + -0.0
2,329,131 + -1.0
2,329,131 + +1.6
2,329,131 + -0.2
2,329,131 + -1.0
2,329,131 + +0.6
2,329,131 + -1.4
2,329,131 + +0.6
2,329,131 + +0.6
2,329,131 + -1.0
2,329,131 + -1.0
2,329,131 + -0.4
2,329,131 + -0.4
2,329,131 + -1.0
2,329,131 + -0.2
2,329,131 + -1.4
2,329,131 + -1.4
2,329,131 + -0.4
2,329,131 + -1.0
2,329,131 + -1.0
2,329,131 + +2.6
2,329,132 - -0.6
2,329,132 - +3.9
2,329,132 - +2.8
2,329,132 - +3.1
2,329,132 - +3.1
2,329,132 - +2.1
2,329,132 - +2.9
2,329,132 - +0.9
2,329,132 - +3.4
2,329,132 - +1.4
2,329,132 - -0.4
2,329,132 - +0.6
2,329,132 - +3.1
2,329,132 - +4.3
2,329,132 - -0.0
2,329,132 - +2.3
2,329,132 - +1.9
2,329,132 - +1.8
2,329,132 - +0.3
2,329,132 - +2.0
2,329,132 - +0.6
2,329,132 - +2.5
2,329,132 - -1.4
2,329,132 - +1.0
2,329,132 - +3.3
2,329,132 - +2.9
2,329,132 - +2.5
2,329,132 - +2.5
2,329,132 - +1.5
2,329,247 + -1.0
2,329,247 + +2.1
2,329,247 + -0.1
2,329,247 + +1.5
2,329,247 + -2.8
2,329,248 - +2.8
2,329,248 - +2.6
2,329,248 - +1.9
2,329,248 - +1.6
2,329,257 - -0.4
2,329,349 + AO353_10625 0.11 -2.2
2,329,349 + AO353_10625 0.11 -0.0
2,329,349 + AO353_10625 0.11 -2.8
2,329,349 + AO353_10625 0.11 -2.0
2,329,349 + AO353_10625 0.11 -0.0
2,329,349 + AO353_10625 0.11 -1.8
2,329,349 + AO353_10625 0.11 +0.2
2,329,349 + AO353_10625 0.11 -1.0
2,329,349 + AO353_10625 0.11 -2.2
2,329,349 + AO353_10625 0.11 -0.4
2,329,349 + AO353_10625 0.11 +0.6
2,329,349 + AO353_10625 0.11 -0.4
2,329,349 + AO353_10625 0.11 -0.4
2,329,350 - AO353_10625 0.11 +3.4
2,329,350 - AO353_10625 0.11 +0.6
2,329,350 - AO353_10625 0.11 +2.0
2,329,350 - AO353_10625 0.11 +1.6
2,329,350 - AO353_10625 0.11 +0.6
2,329,350 - AO353_10625 0.11 +1.9
2,329,350 - AO353_10625 0.11 -0.4
2,329,350 - AO353_10625 0.11 +1.9
2,329,352 + AO353_10625 0.11 -2.0
2,329,352 + AO353_10625 0.11 -1.0
2,329,352 + AO353_10625 0.11 -0.4
2,329,352 + AO353_10625 0.11 -0.9
2,329,353 - AO353_10625 0.11 +2.6
2,329,353 - AO353_10625 0.11 +0.6
2,329,353 - AO353_10625 0.11 +1.8
2,329,353 - AO353_10625 0.11 +1.3
2,329,353 - AO353_10625 0.11 +1.9
2,329,353 - AO353_10625 0.11 -0.0
2,329,353 - AO353_10625 0.11 +2.8
2,329,353 - AO353_10625 0.11 +1.6
2,329,509 - AO353_10625 0.22 +1.7
2,329,547 + AO353_10625 0.25 -1.0
2,329,573 + AO353_10625 0.27 -1.4
2,329,573 + AO353_10625 0.27 -0.4
2,329,573 + AO353_10625 0.27 -1.0
2,329,573 + AO353_10625 0.27 +0.6
2,329,573 + AO353_10625 0.27 +0.1
2,329,573 + AO353_10625 0.27 -0.4
2,329,573 + AO353_10625 0.27 +2.1
2,329,573 + AO353_10625 0.27 -1.8
2,329,573 + AO353_10625 0.27 -0.2
2,329,573 + AO353_10625 0.27 -1.0
2,329,574 - AO353_10625 0.27 +2.6
2,329,574 - AO353_10625 0.27 +4.0
2,329,695 - AO353_10625 0.36 +1.0
2,329,710 + AO353_10625 0.37 +2.6
2,329,710 + AO353_10625 0.37 -0.8
2,329,710 + AO353_10625 0.37 -0.7
2,329,710 + AO353_10625 0.37 -1.0
2,329,710 + AO353_10625 0.37 +1.6
2,329,710 + AO353_10625 0.37 +0.6
2,329,710 + AO353_10625 0.37 -0.0
2,329,710 + AO353_10625 0.37 +1.2
2,329,710 + AO353_10625 0.37 -0.4
2,329,710 + AO353_10625 0.37 -1.0
2,329,710 + AO353_10625 0.37 -1.0
2,329,711 - AO353_10625 0.37 -1.8
2,329,711 - AO353_10625 0.37 +3.1
2,329,711 - AO353_10625 0.37 +2.6
2,329,711 - AO353_10625 0.37 +2.1
2,329,711 - AO353_10625 0.37 +2.9
2,329,711 - AO353_10625 0.37 +0.6
2,329,771 + AO353_10625 0.42 -1.4
2,329,771 + AO353_10625 0.42 +0.1
2,329,814 - AO353_10625 0.45 +1.0
2,329,882 + AO353_10625 0.50 +1.3
2,329,882 + AO353_10625 0.50 +1.1
2,329,882 + AO353_10625 0.50 +0.1
2,329,882 + AO353_10625 0.50 +0.6
2,329,882 + AO353_10625 0.50 +1.6
2,329,882 + AO353_10625 0.50 -1.4
2,329,882 + AO353_10625 0.50 +0.6
2,329,882 + AO353_10625 0.50 -1.0
2,329,882 + AO353_10625 0.50 +2.1
2,329,882 + AO353_10625 0.50 -2.2
2,329,882 + AO353_10625 0.50 +1.6
2,329,882 + AO353_10625 0.50 -0.0
2,329,882 + AO353_10625 0.50 -1.0
2,329,883 - AO353_10625 0.50 +2.9
2,329,883 - AO353_10625 0.50 +3.5
2,329,883 - AO353_10625 0.50 +1.9
2,329,883 - AO353_10625 0.50 +3.1
2,329,883 - AO353_10625 0.50 +1.9
2,329,883 - AO353_10625 0.50 +1.1
2,329,944 - AO353_10625 0.54 +2.3

Or see this region's nucleotide sequence