Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08980

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08975 and AO353_08980 overlap by 4 nucleotidesAO353_08980 and AO353_08985 are separated by 16 nucleotidesAO353_08985 and AO353_08990 overlap by 4 nucleotides AO353_08975: AO353_08975 - heme biosynthesis protein HemY, at 1,970,576 to 1,971,814 _08975 AO353_08980: AO353_08980 - heme biosynthesis operon protein HemX, at 1,971,811 to 1,972,935 _08980 AO353_08985: AO353_08985 - uroporphyrinogen-III synthase, at 1,972,952 to 1,973,716 _08985 AO353_08990: AO353_08990 - porphobilinogen deaminase, at 1,973,713 to 1,974,654 _08990 Position (kb) 1971 1972 1973Strain fitness (log2 ratio) -2 -1 0 1 2at 1970.892 kb on + strand, within AO353_08975at 1970.893 kb on - strand, within AO353_08975at 1970.893 kb on - strand, within AO353_08975at 1970.893 kb on - strand, within AO353_08975at 1970.916 kb on + strand, within AO353_08975at 1970.916 kb on + strand, within AO353_08975at 1970.917 kb on - strand, within AO353_08975at 1970.917 kb on - strand, within AO353_08975at 1970.917 kb on - strand, within AO353_08975at 1970.917 kb on - strand, within AO353_08975at 1970.917 kb on - strand, within AO353_08975at 1970.917 kb on - strand, within AO353_08975at 1970.917 kb on - strand, within AO353_08975at 1970.920 kb on + strand, within AO353_08975at 1970.920 kb on + strand, within AO353_08975at 1970.921 kb on - strand, within AO353_08975at 1970.921 kb on - strand, within AO353_08975at 1970.921 kb on - strand, within AO353_08975at 1971.063 kb on - strand, within AO353_08975at 1971.063 kb on - strand, within AO353_08975at 1971.074 kb on - strand, within AO353_08975at 1971.074 kb on - strand, within AO353_08975at 1971.411 kb on + strand, within AO353_08975at 1971.450 kb on + strand, within AO353_08975at 1971.453 kb on + strand, within AO353_08975at 1971.454 kb on - strand, within AO353_08975at 1971.600 kb on - strand, within AO353_08975at 1971.600 kb on - strand, within AO353_08975at 1971.600 kb on - strand, within AO353_08975at 1971.647 kb on + strand, within AO353_08975at 1971.647 kb on + strand, within AO353_08975at 1971.718 kb on - strandat 1971.801 kb on + strandat 1971.801 kb on + strandat 1971.801 kb on + strandat 1971.801 kb on + strandat 1971.801 kb on + strandat 1971.802 kb on - strandat 1971.802 kb on - strandat 1971.831 kb on + strandat 1971.831 kb on + strandat 1971.832 kb on - strandat 1971.874 kb on - strandat 1971.887 kb on + strandat 1972.048 kb on - strand, within AO353_08980at 1972.049 kb on + strand, within AO353_08980at 1972.049 kb on + strand, within AO353_08980at 1972.049 kb on + strand, within AO353_08980at 1972.050 kb on - strand, within AO353_08980at 1972.050 kb on - strand, within AO353_08980at 1972.050 kb on - strand, within AO353_08980at 1972.050 kb on - strand, within AO353_08980at 1972.187 kb on + strand, within AO353_08980at 1972.363 kb on - strand, within AO353_08980at 1972.657 kb on + strand, within AO353_08980at 1972.870 kb on + strandat 1972.870 kb on + strandat 1972.870 kb on + strandat 1972.871 kb on - strandat 1972.908 kb on + strandat 1972.908 kb on + strandat 1972.909 kb on - strandat 1972.909 kb on - strandat 1972.938 kb on - strandat 1972.938 kb on - strandat 1972.938 kb on - strandat 1972.938 kb on - strandat 1972.938 kb on - strandat 1972.938 kb on - strandat 1972.953 kb on + strandat 1972.954 kb on - strandat 1972.954 kb on - strandat 1972.954 kb on - strandat 1972.954 kb on - strandat 1973.726 kb on - strandat 1973.726 kb on - strandat 1973.726 kb on - strandat 1973.736 kb on - strandat 1973.736 kb on - strandat 1973.736 kb on - strandat 1973.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,970,892 + AO353_08975 0.26 -0.5
1,970,893 - AO353_08975 0.26 +0.5
1,970,893 - AO353_08975 0.26 -0.9
1,970,893 - AO353_08975 0.26 +1.1
1,970,916 + AO353_08975 0.27 +1.5
1,970,916 + AO353_08975 0.27 -1.5
1,970,917 - AO353_08975 0.28 -0.8
1,970,917 - AO353_08975 0.28 -0.8
1,970,917 - AO353_08975 0.28 +1.2
1,970,917 - AO353_08975 0.28 -0.1
1,970,917 - AO353_08975 0.28 +1.3
1,970,917 - AO353_08975 0.28 +1.1
1,970,917 - AO353_08975 0.28 +1.5
1,970,920 + AO353_08975 0.28 -0.5
1,970,920 + AO353_08975 0.28 -0.5
1,970,921 - AO353_08975 0.28 +1.1
1,970,921 - AO353_08975 0.28 -2.3
1,970,921 - AO353_08975 0.28 +1.5
1,971,063 - AO353_08975 0.39 -1.5
1,971,063 - AO353_08975 0.39 -1.8
1,971,074 - AO353_08975 0.40 +1.5
1,971,074 - AO353_08975 0.40 -1.1
1,971,411 + AO353_08975 0.67 +1.1
1,971,450 + AO353_08975 0.71 +1.1
1,971,453 + AO353_08975 0.71 +0.5
1,971,454 - AO353_08975 0.71 -1.1
1,971,600 - AO353_08975 0.83 -0.5
1,971,600 - AO353_08975 0.83 +2.5
1,971,600 - AO353_08975 0.83 -1.8
1,971,647 + AO353_08975 0.86 -0.1
1,971,647 + AO353_08975 0.86 -0.5
1,971,718 - +0.9
1,971,801 + -0.1
1,971,801 + -0.5
1,971,801 + -1.1
1,971,801 + -1.1
1,971,801 + -0.5
1,971,802 - -0.3
1,971,802 - -0.1
1,971,831 + -0.5
1,971,831 + -1.1
1,971,832 - -0.5
1,971,874 - +0.8
1,971,887 + -0.8
1,972,048 - AO353_08980 0.21 +0.5
1,972,049 + AO353_08980 0.21 -2.1
1,972,049 + AO353_08980 0.21 -1.1
1,972,049 + AO353_08980 0.21 +1.1
1,972,050 - AO353_08980 0.21 -1.1
1,972,050 - AO353_08980 0.21 +0.5
1,972,050 - AO353_08980 0.21 +0.8
1,972,050 - AO353_08980 0.21 -0.8
1,972,187 + AO353_08980 0.33 -1.5
1,972,363 - AO353_08980 0.49 -1.8
1,972,657 + AO353_08980 0.75 +0.5
1,972,870 + -1.5
1,972,870 + +0.5
1,972,870 + +0.5
1,972,871 - -0.5
1,972,908 + +1.5
1,972,908 + +1.1
1,972,909 - -0.5
1,972,909 - -0.5
1,972,938 - +1.5
1,972,938 - -0.2
1,972,938 - -1.5
1,972,938 - +0.1
1,972,938 - -0.7
1,972,938 - +0.2
1,972,953 + -0.1
1,972,954 - -0.1
1,972,954 - -1.1
1,972,954 - -0.5
1,972,954 - -0.8
1,973,726 - +2.5
1,973,726 - +2.1
1,973,726 - -0.1
1,973,736 - -0.8
1,973,736 - -0.6
1,973,736 - -0.1
1,973,736 - +0.8

Or see this region's nucleotide sequence