Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07805 and AO353_07810 are separated by 214 nucleotides AO353_07810 and AO353_07815 are separated by 185 nucleotides
AO353_07805: AO353_07805 - betaine-aldehyde dehydrogenase, at 1,720,555 to 1,722,027
_07805
AO353_07810: AO353_07810 - choline dehydrogenase, at 1,722,242 to 1,723,945
_07810
AO353_07815: AO353_07815 - hypothetical protein, at 1,724,131 to 1,725,114
_07815
Position (kb)
1722
1723
1724 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1721.392 kb on + strand, within AO353_07805 at 1721.392 kb on + strand, within AO353_07805 at 1721.392 kb on + strand, within AO353_07805 at 1721.393 kb on - strand, within AO353_07805 at 1721.393 kb on - strand, within AO353_07805 at 1721.393 kb on - strand, within AO353_07805 at 1721.393 kb on - strand, within AO353_07805 at 1721.393 kb on - strand, within AO353_07805 at 1721.520 kb on + strand, within AO353_07805 at 1721.520 kb on + strand, within AO353_07805 at 1721.572 kb on + strand, within AO353_07805 at 1721.572 kb on + strand, within AO353_07805 at 1721.572 kb on + strand, within AO353_07805 at 1721.586 kb on + strand, within AO353_07805 at 1721.586 kb on + strand, within AO353_07805 at 1721.587 kb on - strand, within AO353_07805 at 1721.587 kb on - strand, within AO353_07805 at 1721.746 kb on + strand, within AO353_07805 at 1721.746 kb on + strand, within AO353_07805 at 1721.746 kb on + strand, within AO353_07805 at 1721.747 kb on - strand, within AO353_07805 at 1721.747 kb on - strand, within AO353_07805 at 1721.747 kb on - strand, within AO353_07805 at 1721.747 kb on - strand, within AO353_07805 at 1721.865 kb on + strand, within AO353_07805 at 1721.920 kb on + strand at 1722.254 kb on + strand at 1722.255 kb on - strand at 1722.255 kb on - strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.369 kb on + strand at 1722.369 kb on + strand at 1722.425 kb on + strand, within AO353_07810 at 1722.426 kb on - strand, within AO353_07810 at 1722.438 kb on - strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.557 kb on + strand, within AO353_07810 at 1722.557 kb on + strand, within AO353_07810 at 1722.558 kb on - strand, within AO353_07810 at 1722.558 kb on - strand, within AO353_07810 at 1722.599 kb on + strand, within AO353_07810 at 1722.599 kb on + strand, within AO353_07810 at 1722.599 kb on + strand, within AO353_07810 at 1722.599 kb on + strand, within AO353_07810 at 1722.600 kb on - strand, within AO353_07810 at 1722.617 kb on + strand, within AO353_07810 at 1722.618 kb on - strand, within AO353_07810 at 1722.659 kb on + strand, within AO353_07810 at 1722.659 kb on + strand, within AO353_07810 at 1722.697 kb on + strand, within AO353_07810 at 1722.697 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.827 kb on - strand, within AO353_07810 at 1722.951 kb on + strand, within AO353_07810 at 1722.951 kb on + strand, within AO353_07810 at 1722.951 kb on + strand, within AO353_07810 at 1722.951 kb on + strand, within AO353_07810 at 1722.952 kb on - strand, within AO353_07810 at 1722.952 kb on - strand, within AO353_07810 at 1722.952 kb on - strand, within AO353_07810 at 1722.952 kb on - strand, within AO353_07810 at 1722.956 kb on + strand, within AO353_07810 at 1723.154 kb on + strand, within AO353_07810 at 1723.154 kb on + strand, within AO353_07810 at 1723.154 kb on + strand, within AO353_07810 at 1723.155 kb on - strand, within AO353_07810 at 1723.155 kb on - strand, within AO353_07810 at 1723.163 kb on + strand, within AO353_07810 at 1723.164 kb on - strand, within AO353_07810 at 1723.164 kb on - strand, within AO353_07810 at 1723.188 kb on + strand, within AO353_07810 at 1723.208 kb on + strand, within AO353_07810 at 1723.208 kb on + strand, within AO353_07810 at 1723.209 kb on - strand, within AO353_07810 at 1723.355 kb on - strand, within AO353_07810 at 1723.355 kb on - strand, within AO353_07810 at 1723.355 kb on - strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.880 kb on + strand at 1723.880 kb on + strand at 1723.881 kb on - strand at 1723.881 kb on - strand at 1723.881 kb on - strand at 1723.881 kb on - strand at 1723.881 kb on - strand at 1723.943 kb on + strand at 1723.943 kb on + strand at 1723.966 kb on + strand at 1723.966 kb on + strand at 1723.966 kb on + strand at 1723.967 kb on - strand at 1723.967 kb on - strand at 1723.967 kb on - strand at 1724.010 kb on - strand at 1724.025 kb on + strand at 1724.148 kb on - strand at 1724.320 kb on + strand, within AO353_07815 at 1724.321 kb on - strand, within AO353_07815 at 1724.368 kb on - strand, within AO353_07815 at 1724.435 kb on + strand, within AO353_07815 at 1724.454 kb on + strand, within AO353_07815 at 1724.465 kb on - strand, within AO353_07815 at 1724.563 kb on + strand, within AO353_07815 at 1724.563 kb on + strand, within AO353_07815 at 1724.563 kb on + strand, within AO353_07815 at 1724.564 kb on - strand, within AO353_07815 at 1724.564 kb on - strand, within AO353_07815 at 1724.564 kb on - strand, within AO353_07815 at 1724.579 kb on + strand, within AO353_07815 at 1724.579 kb on + strand, within AO353_07815 at 1724.580 kb on - strand, within AO353_07815 at 1724.580 kb on - strand, within AO353_07815 at 1724.585 kb on - strand, within AO353_07815 at 1724.585 kb on - strand, within AO353_07815 at 1724.633 kb on - strand, within AO353_07815 at 1724.635 kb on + strand, within AO353_07815 at 1724.764 kb on + strand, within AO353_07815 at 1724.776 kb on + strand, within AO353_07815 at 1724.776 kb on + strand, within AO353_07815 at 1724.776 kb on + strand, within AO353_07815 at 1724.776 kb on + strand, within AO353_07815 at 1724.777 kb on - strand, within AO353_07815 at 1724.777 kb on - strand, within AO353_07815 at 1724.777 kb on - strand, within AO353_07815 at 1724.777 kb on - strand, within AO353_07815 at 1724.777 kb on - strand, within AO353_07815 at 1724.818 kb on - strand, within AO353_07815 at 1724.858 kb on + strand, within AO353_07815 at 1724.858 kb on + strand, within AO353_07815 at 1724.858 kb on + strand, within AO353_07815 at 1724.858 kb on + strand, within AO353_07815 at 1724.859 kb on - strand, within AO353_07815 at 1724.870 kb on + strand, within AO353_07815 at 1724.871 kb on - strand, within AO353_07815
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 1,721,392 + AO353_07805 0.57 -1.2 1,721,392 + AO353_07805 0.57 -1.0 1,721,392 + AO353_07805 0.57 -2.6 1,721,393 - AO353_07805 0.57 -0.6 1,721,393 - AO353_07805 0.57 -3.0 1,721,393 - AO353_07805 0.57 +0.4 1,721,393 - AO353_07805 0.57 -2.2 1,721,393 - AO353_07805 0.57 -0.5 1,721,520 + AO353_07805 0.66 -0.2 1,721,520 + AO353_07805 0.66 +0.4 1,721,572 + AO353_07805 0.69 -1.2 1,721,572 + AO353_07805 0.69 -2.8 1,721,572 + AO353_07805 0.69 -2.0 1,721,586 + AO353_07805 0.70 -0.6 1,721,586 + AO353_07805 0.70 -0.6 1,721,587 - AO353_07805 0.70 -2.6 1,721,587 - AO353_07805 0.70 -0.2 1,721,746 + AO353_07805 0.81 -1.2 1,721,746 + AO353_07805 0.81 -0.2 1,721,746 + AO353_07805 0.81 -1.0 1,721,747 - AO353_07805 0.81 -1.2 1,721,747 - AO353_07805 0.81 -1.2 1,721,747 - AO353_07805 0.81 -1.6 1,721,747 - AO353_07805 0.81 -1.2 1,721,865 + AO353_07805 0.89 -1.6 1,721,920 + +0.4 1,722,254 + -0.6 1,722,255 - -1.6 1,722,255 - -2.2 1,722,260 + +0.9 1,722,260 + -0.9 1,722,260 + -2.8 1,722,260 + +0.9 1,722,260 + -1.6 1,722,260 + -1.6 1,722,260 + +0.4 1,722,260 + -0.6 1,722,260 + -2.0 1,722,260 + -1.1 1,722,260 + -1.6 1,722,260 + -1.5 1,722,260 + -1.2 1,722,260 + -2.0 1,722,260 + -1.8 1,722,261 - -2.1 1,722,261 - -0.2 1,722,261 - -1.3 1,722,261 - -0.1 1,722,261 - -0.2 1,722,261 - -1.6 1,722,261 - -0.6 1,722,261 - -0.2 1,722,261 - +0.4 1,722,261 - -1.6 1,722,261 - -2.6 1,722,261 - +1.4 1,722,369 + -1.5 1,722,369 + -0.6 1,722,425 + AO353_07810 0.11 -3.3 1,722,426 - AO353_07810 0.11 -2.2 1,722,438 - AO353_07810 0.12 -1.5 1,722,533 + AO353_07810 0.17 -1.6 1,722,533 + AO353_07810 0.17 -0.6 1,722,533 + AO353_07810 0.17 -0.2 1,722,533 + AO353_07810 0.17 -2.8 1,722,533 + AO353_07810 0.17 -1.6 1,722,533 + AO353_07810 0.17 -0.6 1,722,533 + AO353_07810 0.17 -2.2 1,722,533 + AO353_07810 0.17 +0.4 1,722,533 + AO353_07810 0.17 -1.2 1,722,533 + AO353_07810 0.17 -1.2 1,722,533 + AO353_07810 0.17 -1.5 1,722,533 + AO353_07810 0.17 -0.6 1,722,533 + AO353_07810 0.17 -2.6 1,722,534 - AO353_07810 0.17 -0.6 1,722,534 - AO353_07810 0.17 +0.9 1,722,534 - AO353_07810 0.17 +0.4 1,722,534 - AO353_07810 0.17 -1.8 1,722,534 - AO353_07810 0.17 -1.2 1,722,534 - AO353_07810 0.17 -1.2 1,722,534 - AO353_07810 0.17 -2.5 1,722,534 - AO353_07810 0.17 -1.8 1,722,534 - AO353_07810 0.17 -0.6 1,722,534 - AO353_07810 0.17 -2.6 1,722,534 - AO353_07810 0.17 -2.6 1,722,557 + AO353_07810 0.18 -2.0 1,722,557 + AO353_07810 0.18 -2.2 1,722,558 - AO353_07810 0.19 -0.6 1,722,558 - AO353_07810 0.19 -0.2 1,722,599 + AO353_07810 0.21 -1.6 1,722,599 + AO353_07810 0.21 +1.4 1,722,599 + AO353_07810 0.21 -2.0 1,722,599 + AO353_07810 0.21 -1.2 1,722,600 - AO353_07810 0.21 -1.6 1,722,617 + AO353_07810 0.22 -1.2 1,722,618 - AO353_07810 0.22 -1.6 1,722,659 + AO353_07810 0.24 -1.6 1,722,659 + AO353_07810 0.24 -0.6 1,722,697 + AO353_07810 0.27 -0.6 1,722,697 + AO353_07810 0.27 +1.4 1,722,744 + AO353_07810 0.29 -1.2 1,722,744 + AO353_07810 0.29 -2.0 1,722,744 + AO353_07810 0.29 -1.2 1,722,744 + AO353_07810 0.29 -1.6 1,722,744 + AO353_07810 0.29 -1.1 1,722,744 + AO353_07810 0.29 -1.0 1,722,744 + AO353_07810 0.29 -0.6 1,722,745 - AO353_07810 0.30 -1.2 1,722,745 - AO353_07810 0.30 -1.6 1,722,745 - AO353_07810 0.30 -0.2 1,722,745 - AO353_07810 0.30 -2.2 1,722,745 - AO353_07810 0.30 -1.6 1,722,745 - AO353_07810 0.30 +0.8 1,722,827 - AO353_07810 0.34 -0.6 1,722,951 + AO353_07810 0.42 -1.6 1,722,951 + AO353_07810 0.42 +0.4 1,722,951 + AO353_07810 0.42 -2.0 1,722,951 + AO353_07810 0.42 -1.6 1,722,952 - AO353_07810 0.42 -1.6 1,722,952 - AO353_07810 0.42 -1.6 1,722,952 - AO353_07810 0.42 -2.5 1,722,952 - AO353_07810 0.42 -1.0 1,722,956 + AO353_07810 0.42 -1.2 1,723,154 + AO353_07810 0.54 -1.2 1,723,154 + AO353_07810 0.54 -2.6 1,723,154 + AO353_07810 0.54 +0.4 1,723,155 - AO353_07810 0.54 -0.6 1,723,155 - AO353_07810 0.54 -0.9 1,723,163 + AO353_07810 0.54 -2.0 1,723,164 - AO353_07810 0.54 -2.5 1,723,164 - AO353_07810 0.54 +0.4 1,723,188 + AO353_07810 0.56 -2.5 1,723,208 + AO353_07810 0.57 -0.3 1,723,208 + AO353_07810 0.57 -2.0 1,723,209 - AO353_07810 0.57 -2.0 1,723,355 - AO353_07810 0.65 -1.2 1,723,355 - AO353_07810 0.65 -0.2 1,723,355 - AO353_07810 0.65 -1.6 1,723,358 + AO353_07810 0.65 -0.6 1,723,358 + AO353_07810 0.65 -2.0 1,723,358 + AO353_07810 0.65 -2.2 1,723,358 + AO353_07810 0.65 -1.0 1,723,358 + AO353_07810 0.65 +0.7 1,723,358 + AO353_07810 0.65 -1.2 1,723,358 + AO353_07810 0.65 -2.5 1,723,359 - AO353_07810 0.66 -2.2 1,723,359 - AO353_07810 0.66 -2.2 1,723,359 - AO353_07810 0.66 -0.6 1,723,359 - AO353_07810 0.66 -0.9 1,723,359 - AO353_07810 0.66 -0.3 1,723,359 - AO353_07810 0.66 -2.2 1,723,359 - AO353_07810 0.66 +0.9 1,723,359 - AO353_07810 0.66 -1.6 1,723,359 - AO353_07810 0.66 +0.4 1,723,359 - AO353_07810 0.66 -2.0 1,723,487 + AO353_07810 0.73 -2.5 1,723,487 + AO353_07810 0.73 -1.6 1,723,487 + AO353_07810 0.73 -2.8 1,723,487 + AO353_07810 0.73 -1.2 1,723,487 + AO353_07810 0.73 +0.4 1,723,487 + AO353_07810 0.73 -0.2 1,723,487 + AO353_07810 0.73 -0.9 1,723,487 + AO353_07810 0.73 +0.4 1,723,487 + AO353_07810 0.73 -1.5 1,723,487 + AO353_07810 0.73 -2.0 1,723,488 - AO353_07810 0.73 +0.4 1,723,488 - AO353_07810 0.73 +0.4 1,723,488 - AO353_07810 0.73 +0.9 1,723,488 - AO353_07810 0.73 -2.0 1,723,488 - AO353_07810 0.73 -0.4 1,723,488 - AO353_07810 0.73 -2.2 1,723,488 - AO353_07810 0.73 -0.6 1,723,488 - AO353_07810 0.73 -0.9 1,723,877 + -0.6 1,723,877 + -0.9 1,723,877 + -2.6 1,723,877 + -2.6 1,723,877 + +0.4 1,723,877 + -2.5 1,723,877 + +0.4 1,723,877 + -0.2 1,723,878 - -1.2 1,723,878 - -1.2 1,723,878 - -1.5 1,723,878 - +0.4 1,723,878 - -0.1 1,723,878 - -1.2 1,723,878 - -0.2 1,723,878 - -1.2 1,723,878 - -1.2 1,723,878 - -2.2 1,723,880 + -0.6 1,723,880 + -1.8 1,723,881 - -2.0 1,723,881 - -0.6 1,723,881 - -1.2 1,723,881 - -2.2 1,723,881 - -0.6 1,723,943 + +1.6 1,723,943 + +1.1 1,723,966 + +0.4 1,723,966 + -0.2 1,723,966 + +0.4 1,723,967 - -0.6 1,723,967 - -2.2 1,723,967 - -1.2 1,724,010 - -1.6 1,724,025 + +0.7 1,724,148 - +1.4 1,724,320 + AO353_07815 0.19 +0.7 1,724,321 - AO353_07815 0.19 +0.4 1,724,368 - AO353_07815 0.24 -0.1 1,724,435 + AO353_07815 0.31 +0.7 1,724,454 + AO353_07815 0.33 +0.9 1,724,465 - AO353_07815 0.34 +1.4 1,724,563 + AO353_07815 0.44 +2.8 1,724,563 + AO353_07815 0.44 +1.4 1,724,563 + AO353_07815 0.44 +0.9 1,724,564 - AO353_07815 0.44 -0.6 1,724,564 - AO353_07815 0.44 +1.4 1,724,564 - AO353_07815 0.44 +0.4 1,724,579 + AO353_07815 0.46 -0.2 1,724,579 + AO353_07815 0.46 +1.8 1,724,580 - AO353_07815 0.46 +2.4 1,724,580 - AO353_07815 0.46 +0.0 1,724,585 - AO353_07815 0.46 -2.2 1,724,585 - AO353_07815 0.46 +0.8 1,724,633 - AO353_07815 0.51 -1.0 1,724,635 + AO353_07815 0.51 +0.4 1,724,764 + AO353_07815 0.64 -0.1 1,724,776 + AO353_07815 0.66 +2.7 1,724,776 + AO353_07815 0.66 -0.2 1,724,776 + AO353_07815 0.66 +1.9 1,724,776 + AO353_07815 0.66 -0.4 1,724,777 - AO353_07815 0.66 -0.6 1,724,777 - AO353_07815 0.66 -0.1 1,724,777 - AO353_07815 0.66 -2.5 1,724,777 - AO353_07815 0.66 -1.2 1,724,777 - AO353_07815 0.66 +0.4 1,724,818 - AO353_07815 0.70 +0.0 1,724,858 + AO353_07815 0.74 +0.9 1,724,858 + AO353_07815 0.74 +0.4 1,724,858 + AO353_07815 0.74 -1.1 1,724,858 + AO353_07815 0.74 +0.4 1,724,859 - AO353_07815 0.74 -0.4 1,724,870 + AO353_07815 0.75 -0.3 1,724,871 - AO353_07815 0.75 -0.1
Or see this region's nucleotide sequence