Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2209

Experiment: MoYLS4 with nitrite 0.625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2208 and DvMF_2209 are separated by 292 nucleotidesDvMF_2209 and DvMF_2210 are separated by 24 nucleotidesDvMF_2210 and DvMF_2211 are separated by 1 nucleotides DvMF_2208: DvMF_2208 - alanine racemase domain protein (RefSeq), at 2,762,163 to 2,762,981 _2208 DvMF_2209: DvMF_2209 - MotA/TolQ/ExbB proton channel (RefSeq), at 2,763,274 to 2,764,032 _2209 DvMF_2210: DvMF_2210 - OmpA/MotB domain protein (RefSeq), at 2,764,057 to 2,764,980 _2210 DvMF_2211: DvMF_2211 - OmpA/MotB domain protein (RefSeq), at 2,764,982 to 2,765,917 _2211 Position (kb) 2763 2764 2765Strain fitness (log2 ratio) -2 -1 0 1at 2762.327 kb on + strand, within DvMF_2208at 2762.549 kb on + strand, within DvMF_2208at 2762.555 kb on - strand, within DvMF_2208at 2762.584 kb on + strand, within DvMF_2208at 2763.341 kb on - strandat 2763.581 kb on - strand, within DvMF_2209at 2763.849 kb on + strand, within DvMF_2209at 2764.049 kb on - strandat 2764.237 kb on + strand, within DvMF_2210at 2764.237 kb on + strand, within DvMF_2210at 2764.247 kb on + strand, within DvMF_2210at 2764.255 kb on - strand, within DvMF_2210at 2764.636 kb on + strand, within DvMF_2210at 2764.641 kb on + strand, within DvMF_2210at 2764.738 kb on - strand, within DvMF_2210at 2764.819 kb on - strand, within DvMF_2210at 2764.821 kb on + strand, within DvMF_2210at 2764.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrite 0.625 mg/ml
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2,762,327 + DvMF_2208 0.20 -0.9
2,762,549 + DvMF_2208 0.47 -0.7
2,762,555 - DvMF_2208 0.48 -0.1
2,762,584 + DvMF_2208 0.51 -2.4
2,763,341 - -0.1
2,763,581 - DvMF_2209 0.40 +1.0
2,763,849 + DvMF_2209 0.76 +0.3
2,764,049 - -0.1
2,764,237 + DvMF_2210 0.19 -0.0
2,764,237 + DvMF_2210 0.19 -1.0
2,764,247 + DvMF_2210 0.21 -0.4
2,764,255 - DvMF_2210 0.21 -0.9
2,764,636 + DvMF_2210 0.63 -0.5
2,764,641 + DvMF_2210 0.63 -0.2
2,764,738 - DvMF_2210 0.74 -0.7
2,764,819 - DvMF_2210 0.82 -0.8
2,764,821 + DvMF_2210 0.83 -0.6
2,764,929 - -0.7

Or see this region's nucleotide sequence