Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1357

Experiment: MoYLS4 with nitrite 0.625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1356 and DvMF_1357 are separated by 226 nucleotidesDvMF_1357 and DvMF_1358 are separated by 102 nucleotides DvMF_1356: DvMF_1356 - tyrosyl-tRNA synthetase (RefSeq), at 1,658,791 to 1,659,990 _1356 DvMF_1357: DvMF_1357 - metallophosphoesterase (RefSeq), at 1,660,217 to 1,661,059 _1357 DvMF_1358: DvMF_1358 - molybdenum cofactor synthesis domain protein (RefSeq), at 1,661,162 to 1,662,460 _1358 Position (kb) 1660 1661 1662Strain fitness (log2 ratio) -1 0 1at 1660.164 kb on - strandat 1660.307 kb on - strand, within DvMF_1357at 1660.413 kb on + strand, within DvMF_1357at 1660.649 kb on + strand, within DvMF_1357at 1660.658 kb on + strand, within DvMF_1357at 1660.745 kb on - strand, within DvMF_1357at 1660.747 kb on + strand, within DvMF_1357at 1661.250 kb on - strandat 1661.501 kb on + strand, within DvMF_1358at 1661.545 kb on - strand, within DvMF_1358at 1661.545 kb on - strand, within DvMF_1358at 1661.545 kb on - strand, within DvMF_1358at 1661.824 kb on + strand, within DvMF_1358at 1662.013 kb on + strand, within DvMF_1358

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrite 0.625 mg/ml
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1,660,164 - -0.4
1,660,307 - DvMF_1357 0.11 -0.5
1,660,413 + DvMF_1357 0.23 -0.7
1,660,649 + DvMF_1357 0.51 -0.6
1,660,658 + DvMF_1357 0.52 -0.6
1,660,745 - DvMF_1357 0.63 -0.8
1,660,747 + DvMF_1357 0.63 -0.2
1,661,250 - +0.2
1,661,501 + DvMF_1358 0.26 -0.4
1,661,545 - DvMF_1358 0.29 +0.1
1,661,545 - DvMF_1358 0.29 -0.1
1,661,545 - DvMF_1358 0.29 +0.4
1,661,824 + DvMF_1358 0.51 -0.2
1,662,013 + DvMF_1358 0.66 -0.0

Or see this region's nucleotide sequence