Experiment: MoYLS4 with nitrite 0.625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1169 and DvMF_1170 are separated by 410 nucleotides DvMF_1170 and DvMF_1171 are separated by 30 nucleotides DvMF_1171 and DvMF_1172 are separated by 124 nucleotides
DvMF_1169: DvMF_1169 - hypothetical protein (RefSeq), at 1,443,829 to 1,446,888
_1169
DvMF_1170: DvMF_1170 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 1,447,299 to 1,448,294
_1170
DvMF_1171: DvMF_1171 - C_GCAxxG_C_C family protein (RefSeq), at 1,448,325 to 1,449,098
_1171
DvMF_1172: DvMF_1172 - Rhodanese domain protein (RefSeq), at 1,449,223 to 1,449,744
_1172
Position (kb)
1447
1448
1449 Strain fitness (log2 ratio)
-1
0
1 at 1446.358 kb on - strand, within DvMF_1169 at 1446.479 kb on - strand, within DvMF_1169 at 1446.697 kb on + strand at 1446.726 kb on - strand at 1446.795 kb on - strand at 1447.093 kb on - strand at 1447.238 kb on + strand at 1447.246 kb on - strand at 1447.246 kb on - strand at 1447.519 kb on - strand, within DvMF_1170 at 1447.741 kb on + strand at 1447.961 kb on - strand, within DvMF_1170 at 1448.042 kb on + strand, within DvMF_1170 at 1448.105 kb on + strand, within DvMF_1170 at 1448.389 kb on - strand at 1448.919 kb on - strand, within DvMF_1171 at 1448.971 kb on - strand, within DvMF_1171 at 1449.000 kb on + strand, within DvMF_1171 at 1449.244 kb on + strand at 1449.244 kb on + strand at 1449.252 kb on - strand at 1449.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrite 0.625 mg/ml remove 1,446,358 - DvMF_1169 0.83 +0.1 1,446,479 - DvMF_1169 0.87 -0.0 1,446,697 + -0.3 1,446,726 - +0.3 1,446,795 - -0.1 1,447,093 - -0.9 1,447,238 + -0.9 1,447,246 - -0.2 1,447,246 - -0.2 1,447,519 - DvMF_1170 0.22 -0.9 1,447,741 + +1.2 1,447,961 - DvMF_1170 0.66 -0.5 1,448,042 + DvMF_1170 0.75 -0.5 1,448,105 + DvMF_1170 0.81 -0.4 1,448,389 - -0.6 1,448,919 - DvMF_1171 0.77 -0.4 1,448,971 - DvMF_1171 0.83 -0.2 1,449,000 + DvMF_1171 0.87 -0.3 1,449,244 + -0.9 1,449,244 + -0.1 1,449,252 - -0.1 1,449,252 - -1.1
Or see this region's nucleotide sequence